Detection of Rare Aberrantly Methylated Regions in Array and NGS Data


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Documentation for package ‘ramr’ version 1.15.2

Help Pages

getAMR Search for aberrantly methylated regions
getAMR.obsolete [OBSOLETE] Search for aberrantly methylated regions
getUniverse Merges, filters and outputs all genomic regions of a given 'GRanges' object
plotAMR Plot aberrantly methylated regions
ramr.data Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
ramr.samples Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
ramr.tp.nonunique Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
ramr.tp.unique Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
simulateAMR Simulate a set of aberrantly methylated regions
simulateData Template-based simulation of methylation data sets
simulateData.obsolete [OBSOLETE] Template-based simulation of methylation data sets