ideal-package |
ideal: Interactive Differential Expression Analysis |
deprecated |
Deprecated functions in ideal |
deseqresult2DEgenes |
Generate a tidy table with the DE genes from the results of DESeq |
deseqresult2tbl |
Generate a tidy table with the results of DESeq |
ggplotCounts |
Plot normalized counts for a gene |
goseqTable |
Extract functional terms enriched in the DE genes, based on goseq |
ideal |
ideal: Interactive Differential Expression Analysis |
ideal-pkg |
ideal: Interactive Differential Expression Analysis |
plot_ma |
MA-plot from base means and log fold changes |
plot_volcano |
Volcano plot for log fold changes and log p-values |
read_gmt |
Read in a GMT file |
sepguesser |
Make an educated guess on the separator character |
sig_heatmap |
Plot a heatmap of the gene signature on the data |
wrapup_for_iSEE |
wrapup_for_iSEE |