Interactive Differential Expression AnaLysis

---

Documentation for package ‘ideal’ version 2.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ideal-package	ideal: Interactive Differential Expression Analysis
deprecated	Deprecated functions in ideal
deseqresult2DEgenes	Generate a tidy table with the DE genes from the results of DESeq
deseqresult2tbl	Generate a tidy table with the results of DESeq
ggplotCounts	Plot normalized counts for a gene
goseqTable	Extract functional terms enriched in the DE genes, based on goseq
ideal	ideal: Interactive Differential Expression Analysis
ideal-pkg	ideal: Interactive Differential Expression Analysis
plot_ma	MA-plot from base means and log fold changes
plot_volcano	Volcano plot for log fold changes and log p-values
read_gmt	Read in a GMT file
sepguesser	Make an educated guess on the separator character
sig_heatmap	Plot a heatmap of the gene signature on the data
wrapup_for_iSEE	wrapup_for_iSEE