Interactive Differential Expression AnaLysis


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Documentation for package ‘ideal’ version 2.1.1

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ideal-package ideal: Interactive Differential Expression Analysis
deprecated Deprecated functions in ideal
deseqresult2DEgenes Generate a tidy table with the DE genes from the results of DESeq
deseqresult2tbl Generate a tidy table with the results of DESeq
ggplotCounts Plot normalized counts for a gene
goseqTable Extract functional terms enriched in the DE genes, based on goseq
ideal ideal: Interactive Differential Expression Analysis
ideal-pkg ideal: Interactive Differential Expression Analysis
plot_ma MA-plot from base means and log fold changes
plot_volcano Volcano plot for log fold changes and log p-values
read_gmt Read in a GMT file
sepguesser Make an educated guess on the separator character
sig_heatmap Plot a heatmap of the gene signature on the data
wrapup_for_iSEE wrapup_for_iSEE