A C D E F G H I L N O P Q R S T V W misc
analysis.params | GEVA Generic Methods |
analysis.params-method | GEVA Grouping Results |
analysis.params-method | GEVA Grouped Summary-Variation Table |
analysis.params-method | GEVA Input Data |
analysis.params-method | GEVA Results Table |
analysis.params-method | GEVA Summary-Variation Table |
as.array.GEVAInput | GEVA Input Data |
as.character.SVAttribute | Summary-Variation Attribute Field |
as.data.frame.GEVAGroupSet | GEVA Grouping Results |
as.data.frame.SVTable | Summary-Variation Table |
as.expression.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
as.expression.GEVAGroupSet | GEVA Grouping Results |
as.expression.GEVAQuantiles | GEVA Quantiles Grouping Results |
as.expression.GEVAResults | GEVA Results Table |
as.expression.GEVASummary | GEVA Summary-Variation Table |
as.list.TypedList | Type-strict List (TypedList-class) |
as.matrix.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
as.matrix.GEVASummary | GEVA Summary-Variation Table |
as.matrix.SVTable | Summary-Variation Table |
as.SVTable | GEVA Generic Methods |
as.SVTable.data.frame | Summary-Variation Table |
as.SVTable.GEVAGroupSet | GEVA Grouping Results |
as.SVTable.GEVAQuantiles | GEVA Quantiles Grouping Results |
as.SVTable.matrix | Summary-Variation Table |
as.SVTable.SVTable | Summary-Variation Table |
as.typed.list.list | Type-strict List (TypedList-class) |
as.typed.list.TypedList | Type-strict List (TypedList-class) |
as.typed.list.vector | Type-strict List (TypedList-class) |
as.vector.SVAttribute | Summary-Variation Attribute Field |
centroids | GEVA Generic Methods |
centroids-method | GEVA Grouping Results |
classification.table | GEVA Generic Methods |
classification.table-method | GEVA Grouping Results |
classification.table-method | GEVA Quantiles Grouping Results |
classification.table<- | GEVA Generic Methods |
classification.table<--method | GEVA Grouping Results |
classification.table<--method | GEVA Quantiles Grouping Results |
cluster.method | GEVA Generic Methods |
cluster.method-method | GEVA Clustering Results |
cluster.method-method | GEVA Grouping Results |
cluster.method-method | GEVA Grouped Summary-Variation Table |
cluster.method-method | GEVA Quantiles Grouping Results |
color.values.GEVAGroupSet | GEVA Grouping Results |
dim-method | GEVA Input Data |
dim-method | GEVA Quantiles Grouping Results |
dim-method | GEVA Results Table |
dim-method | Summary-Variation Attribute Field |
dim-method | Summary-Variation Table |
dimnames-method | GEVA Input Data |
dimnames-method | GEVA Results Table |
dimnames-method | Summary-Variation Table |
dimnames<--method | GEVA Input Data |
elem.class | GEVA Generic Methods |
elem.class-method | Type-strict List (TypedList-class) |
elem.class<- | GEVA Generic Methods |
elem.class<--method | Type-strict List (TypedList-class) |
factors | GEVA Generic Methods |
factors-method | GEVA Input Data |
factors-method | GEVA Summary-Variation Table |
factors<- | GEVA Generic Methods |
factors<--method | GEVA Input Data |
factors<--method | GEVA Summary-Variation Table |
featureTable | GEVA Generic Methods |
featureTable-method | GEVA Grouping Results |
featureTable-method | GEVA Input Data |
featureTable-method | GEVA Results Table |
featureTable-method | GEVA Summary-Variation Table |
featureTable<- | GEVA Generic Methods |
featureTable<--method | GEVA Input Data |
format.SVTable | Summary-Variation Table |
generics | GEVA Generic Methods |
get.distance.method | GEVA Generic Methods |
get.summary.method | GEVA Generic Methods |
get.summary.method.GEVASummary | GEVA Summary-Variation Table |
get.variation.method | GEVA Generic Methods |
get.variation.method.GEVASummary | GEVA Summary-Variation Table |
geva.cluster | GEVA Cluster Analysis |
geva.dcluster | GEVA Density Clustering |
geva.finalize | Concatenating GEVA calculations into the final results |
geva.hcluster | GEVA Hierarchical Clustering |
geva.ideal.example | GEVA "Ideal" Example for Package Testing |
geva.input.correct | GEVA Input Post-processing |
geva.input.filter | GEVA Input Post-processing |
geva.input.rename.rows | GEVA Input Post-processing |
geva.merge.input | GEVA Input Processing and Merge |
geva.quantiles | GEVA Quantiles Detection |
geva.quick | All-In-One Function for GEVA Intermediate Procedures |
geva.read.tables | GEVA Input Processing and Merge |
geva.summarize | Summarizes the GEVAInput |
GEVACluster-class | GEVA Clustering Results |
GEVAGroupedSummary-class | GEVA Grouped Summary-Variation Table |
GEVAGroupSet-class | GEVA Grouping Results |
GEVAInput-class | GEVA Input Data |
GEVAQuantiles-class | GEVA Quantiles Grouping Results |
GEVAQuantilesAdjusted-class | GEVA Adjusted Quantiles Results |
GEVAResults-class | GEVA Results Table |
GEVASummary-class | GEVA Summary-Variation Table |
group.rels | GEVA Generic Methods |
group.rels-method | GEVA Adjusted Quantiles Results |
groups | GEVA Generic Methods |
groups-method | GEVA Grouping Results |
groupsets | GEVA Generic Methods |
groupsets-method | GEVA Grouped Summary-Variation Table |
groupsets-method | GEVA Summary-Variation Table |
groupsets<- | GEVA Generic Methods |
groupsets<--method | GEVA Grouped Summary-Variation Table |
groupsets<--method | GEVA Summary-Variation Table |
head.GEVAInput | GEVA Input Data |
head.GEVAResults | GEVA Results Table |
head.SVTable | Summary-Variation Table |
infolist | GEVA Generic Methods |
infolist-method | GEVA Grouping Results |
infolist-method | GEVA Input Data |
infolist-method | GEVA Results Table |
infolist-method | GEVA Summary-Variation Table |
infolist<- | GEVA Generic Methods |
infolist<--method | GEVA Grouping Results |
infolist<--method | GEVA Input Data |
infolist<--method | GEVA Summary-Variation Table |
inputdata | GEVA Generic Methods |
inputdata-method | GEVA Input Data |
inputdata-method | GEVA Results Table |
inputdata-method | GEVA Summary-Variation Table |
inputnames | GEVA Generic Methods |
inputnames-method | GEVA Input Data |
inputnames-method | GEVA Summary-Variation Table |
inputvalues | GEVA Generic Methods |
inputvalues-method | GEVA Input Data |
inputvalues-method | GEVA Results Table |
inputvalues-method | GEVA Summary-Variation Table |
inputweights | GEVA Generic Methods |
inputweights-method | GEVA Input Data |
inputweights-method | GEVA Results Table |
inputweights-method | GEVA Summary-Variation Table |
is.na.SVTable | Summary-Variation Table |
length-method | GEVA Grouping Results |
length-method | GEVA Input Data |
length-method | GEVA Results Table |
length-method | Summary-Variation Table |
levels.GEVAGroupSet | GEVA Grouping Results |
levels.GEVAInput | GEVA Input Data |
levels.GEVAResults | GEVA Results Table |
lines.GEVACluster | GEVA Clustering Results |
lines.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
lines.GEVAQuantiles | GEVA Quantiles Grouping Results |
names-method | GEVA Grouping Results |
names-method | GEVA Input Data |
names-method | GEVA Results Table |
names-method | Summary-Variation Attribute Field |
names-method | Summary-Variation Table |
offsets | GEVA Generic Methods |
offsets-method | GEVA Grouping Results |
options.cl.score.method | GEVA Cluster Analysis |
options.cluster.method | GEVA Cluster Analysis |
options.dcluster.method | GEVA Density Clustering |
options.distance | GEVA Cluster Analysis |
options.factoring.p.adjust | Concatenating GEVA calculations into the final results |
options.hc.method | GEVA Hierarchical Clustering |
options.hc.metric | GEVA Hierarchical Clustering |
options.quantiles | GEVA Quantiles Detection |
options.summary | Summarizes the GEVAInput |
options.variation | Summarizes the GEVAInput |
plot-method | GEVA Clustering Results |
plot-method | GEVA Grouping Results |
plot-method | GEVA Grouped Summary-Variation Table |
plot-method | GEVA Input Data |
plot-method | GEVA Quantiles Grouping Results |
plot-method | GEVA Results Table |
plot-method | GEVA Summary-Variation Table |
plot-method | Summary-Variation Table |
points.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
points.GEVAGroupSet | GEVA Grouping Results |
points.GEVAResults | GEVA Results Table |
points.SVTable | Summary-Variation Table |
qareasizes | GEVA Generic Methods |
qareasizes-method | GEVA Quantiles Grouping Results |
qcount | GEVA Generic Methods |
qcount-method | GEVA Quantiles Grouping Results |
qindexes | GEVA Generic Methods |
qindexes-method | GEVA Quantiles Grouping Results |
quantiles | GEVA Generic Methods |
quantiles-method | GEVA Grouped Summary-Variation Table |
quantiles-method | GEVA Quantiles Grouping Results |
quantiles-method | GEVA Results Table |
quantiles-method | GEVA Summary-Variation Table |
quantiles.method | GEVA Generic Methods |
quantiles.method-method | GEVA Quantiles Grouping Results |
results.table | GEVA Generic Methods |
results.table-method | GEVA Results Table |
scores | GEVA Generic Methods |
scores-method | GEVA Grouping Results |
show-method | GEVA Clustering Results |
show-method | GEVA Grouping Results |
show-method | GEVA Grouped Summary-Variation Table |
show-method | GEVA Input Data |
show-method | GEVA Quantiles Grouping Results |
show-method | GEVA Adjusted Quantiles Results |
show-method | GEVA Results Table |
show-method | GEVA Summary-Variation Table |
show-method | Summary-Variation Attribute Field |
show-method | Summary-Variation Table |
show-method | Type-strict List (TypedList-class) |
summary.SVAttribute | Summary-Variation Attribute Field |
summary.SVTable | Summary-Variation Table |
sv | GEVA Generic Methods |
sv-method | GEVA Grouping Results |
sv-method | GEVA Results Table |
sv-method | Summary-Variation Attribute Field |
sv-method | Summary-Variation Table |
sv.data | GEVA Generic Methods |
sv.data-method | GEVA Grouping Results |
sv.data-method | GEVA Results Table |
sv.data-method | Summary-Variation Attribute Field |
sv.data-method | Summary-Variation Table |
sv.scores | GEVA Generic Methods |
sv.scores-method | GEVA Quantiles Grouping Results |
svattr | GEVA Generic Methods |
svattr-method | Summary-Variation Attribute Field |
SVAttribute | Summary-Variation Attribute Field |
SVAttribute-class | Summary-Variation Attribute Field |
SVChrAttribute | Summary-Variation Attribute Field |
SVChrAttribute-class | Summary-Variation Attribute Field |
SVIntAttribute | Summary-Variation Attribute Field |
SVIntAttribute-class | Summary-Variation Attribute Field |
SVNumAttribute | Summary-Variation Attribute Field |
SVNumAttribute-class | Summary-Variation Attribute Field |
SVTable | Summary-Variation Table |
svtable | Summary-Variation Table |
SVTable-class | Summary-Variation Table |
tail.GEVAInput | GEVA Input Data |
tail.SVTable | Summary-Variation Table |
top.genes | Top Results from GEVA |
typed.list | Type-strict List (TypedList-class) |
TypedList-class | Type-strict List (TypedList-class) |
variation | GEVA Generic Methods |
variation.SVAttribute | Summary-Variation Attribute Field |
variation.SVTable | Summary-Variation Table |
with.SVTable | Summary-Variation Table |
$-method | GEVA Results Table |
$-method | Summary-Variation Attribute Field |
$-method | Summary-Variation Table |
[-method | GEVA Input Data |
[-method | GEVA Quantiles Grouping Results |
[-method | GEVA Results Table |
[-method | Summary-Variation Attribute Field |
[-method | Summary-Variation Table |
[-method | Type-strict List (TypedList-class) |
[<--method | Type-strict List (TypedList-class) |