A B C D E F G I L N P Q R S T U V W X misc
assayData | ddCt Expression |
barchart | ddCt Expression |
barploterrbar | Barplot with error bars. |
brewer.pal | ddCt Expression |
brewer.pal.info | ddCt Expression |
ColMap | Class "InputReader" |
ColMap-class | Working with SDM files |
coreData | Working with SDM files |
coreData-method | Working with SDM files |
coreData<- | Working with SDM files |
coreData<--method | Working with SDM files |
Ct | ddCt Expression |
Ct-method | Working with SDM files |
Ct-method | ddCt Expression |
Ct<- | Working with SDM files |
Ct<--method | Working with SDM files |
CtErr | ddCt Expression |
CtErr-method | ddCt Expression |
dCt | ddCt Expression |
dCt-method | ddCt Expression |
dCtErr | ddCt Expression |
dCtErr-method | ddCt Expression |
ddCt | ddCt Expression |
ddCt-method | ddCt Expression |
ddCtAbsolute | absolute quantification for Taqman data |
ddCtErr | ddCt Expression |
ddCtErr-method | ddCt Expression |
ddCtExpression | Apply the ddCt algorithm for a given data set |
ddCtExpression-class | ddCt Expression |
ddCtExpression-method | Apply the ddCt algorithm for a given data set |
ddCtExpression-methods | Apply the ddCt algorithm for a given data set |
DEFAULT.CT.COLNAME | Working with SDM files |
DEFAULT.FEATURE.COLNAME | Working with SDM files |
DEFAULT.SAMPLE.COLNAME | Working with SDM files |
detectorNames | Working with SDM files |
detectorNames-method | Working with SDM files |
detectorNames<- | Working with SDM files |
detectorNames<--method | Working with SDM files |
elist | Write ddCtExpression object into data frame or files |
elist-method | ddCt Expression |
elistWrite | Write ddCtExpression object into data frame or files |
elistWrite-method | ddCt Expression |
errBarchart | Draw barchart of relative expression level with error-bars |
errBarchart-method | Draw barchart of relative expression level with error-bars |
errBarchart-methods | Draw barchart of relative expression level with error-bars |
errBarchartParameter-class | Class "errBarchartParameter" |
exprs | ddCt Expression |
exprsUndeterminedLabel-method | Class "errBarchartParameter" |
fData | ddCt Expression |
featureData | ddCt Expression |
featureNames | ddCt Expression |
fileNames | Working with SDM files |
fileNames-method | Working with SDM files |
getDir | Auxillary functions for the executive scripts |
InputFrame | Build an InputFrame from a ReaderClass or a data frame |
InputFrame-class | Working with SDM files |
InputFrame-method | Build an InputFrame from a ReaderClass or a data frame |
InputFrame-method | Read an SDM file |
InputReader-class | Class "InputReader" |
level | ddCt Expression |
level-method | ddCt Expression |
levelErr | ddCt Expression |
levelErr-method | ddCt Expression |
names-method | Working with SDM files |
numberCt | ddCt Expression |
numberCt-method | ddCt Expression |
numberNA | ddCt Expression |
numberNA-method | ddCt Expression |
panel.abline | ddCt Expression |
panel.barchart | ddCt Expression |
panel.grid | ddCt Expression |
panel.segments | ddCt Expression |
panel.text | ddCt Expression |
pData | ddCt Expression |
phenoData | ddCt Expression |
QuantStudioFrame | Read QuantStudio file(s) |
QuantStudioReader-class | Class "InputReader" |
readQuantStudio | Read QuantStudio file(s) |
readSDM | Read an SDM file |
removeDetector | Working with SDM files |
removeDetector-method | Working with SDM files |
removeDetector-methods | Working with SDM files |
removeNTC | Remove NTC samples |
removeNTC-method | Remove NTC samples |
removeNTC-methods | Remove NTC samples |
removeSample | Working with SDM files |
removeSample-method | Working with SDM files |
removeSample-methods | Working with SDM files |
replaceDetector | Working with SDM files |
replaceDetector-method | Working with SDM files |
replaceDetector-methods | Working with SDM files |
replaceSample | Working with SDM files |
replaceSample-method | Working with SDM files |
replaceSample-methods | Working with SDM files |
replaceVectorByEquality | REPLACE ITEMS OF VECTOR BY EQUALITY |
rightCensoring | Working with SDM files |
rightCensoring-method | Working with SDM files |
rightCensoring-method | Read an SDM file |
sampleNames | Working with SDM files |
sampleNames-method | Working with SDM files |
sampleNames<- | Working with SDM files |
sampleNames<--method | Working with SDM files |
SDMFrame | Read an SDM file |
SDMFrame-class | Working with SDM files |
SDMReader-class | Class "InputReader" |
show-method | Working with SDM files |
show-method | Class "errBarchartParameter" |
summary | Write ddCtExpression object into data frame or files |
TSVFrame | Class "InputReader" |
TSVReader-class | Class "InputReader" |
uniqueDetectorNames | Working with SDM files |
uniqueDetectorNames-method | Working with SDM files |
uniqueDetectorNames<- | Working with SDM files |
uniqueDetectorNames<--method | Working with SDM files |
uniqueSampleNames | Working with SDM files |
uniqueSampleNames-method | Working with SDM files |
uniqueSampleNames<- | Working with SDM files |
uniqueSampleNames<--method | Working with SDM files |
varLabels | ddCt Expression |
varMetadata | ddCt Expression |
write.htmltable | Write a data frame into an html table within a html page |
writeSimpleTabCsv | Write a data frame into a tab delimited file |
xtable | ddCt Expression |
"fData<-" | ddCt Expression |
"featureData<-" | ddCt Expression |
"featureNames<-" | ddCt Expression |
"pData<-" | ddCt Expression |
"phenoData<-" | ddCt Expression |
"varMetadata<-" | ddCt Expression |
$-method | Working with SDM files |
[-method | Working with SDM files |
[[-method | Working with SDM files |