CHANGES IN VERSION 1.37.3
-------------------------

  o Removed support for baySeq since it has been deprecated
  o Added runComparisonShiny function

CHANGES IN VERSION 1.35.1
-------------------------

  o Add a function for SVA + limma differential expression analysis

CHANGES IN VERSION 1.31.1
-------------------------

  o Implement simulations according to the phylogenetic poisson log normal model
  o Implement length-varying simulations
  o New PhyloCompData object for phylogenetic informed simulation data
  o Add possible length normalization to DESeq2 and limma analyses
  o Add phylolm analyses

CHANGES IN VERSION 1.23.1
-------------------------

  o Moved vignette to Rmd

CHANGES IN VERSION 1.17.1
-------------------------

  o Removed support for SAMseq since samr has been removed from CRAN

CHANGES IN VERSION 1.5.3
------------------------

  o Updated baySeq code to match package version 2.2.0

CHANGES IN VERSION 1.5.2
------------------------

  o Updated NBPseq code to match package version 0.3.0

CHANGES IN VERSION 1.5.1
------------------------

  o Added the number of significant genes, then number of true positives, true negatives, false positives and false negatives as evaluation criteria.
	o Bug fixes

CHANGES IN VERSION 1.3.4
------------------------

  o Fixed documentation

CHANGES IN VERSION 1.3.3
------------------------

  o Removed support for HTSDiff since it has been removed from CRAN

CHANGES IN VERSION 1.3.2
------------------------

  o Fixed a bug that prevented data sets with more than 17,343 genes to be simulated (thanks to Simon Greenaway)

CHANGES IN VERSION 1.3.1
------------------------

  o Updated vignette
  o Added citation file

CHANGES IN VERSION 1.2.0
------------------------

  o Release version with Bioconductor 3.0

CHANGES IN VERSION 1.1.4
------------------------

  o Added MCC (Matthew's correlation coefficient) as evaluation measure

CHANGES IN VERSION 1.1.3
------------------------

  o Fixed summarizeSyntheticDataSet to work also for non-simulated data

CHANGES IN VERSION 1.1.2
------------------------

  o Added reference information for TCC (thanks to Koji Kadota)

CHANGES IN VERSION 1.1.1
------------------------

  o Bug fix in EBSeq quantile normalization (thanks to Rory Kirchner)

CHANGES IN VERSION 0.99.3
-------------------------

  o Bug fixes

CHANGES IN VERSION 0.99.2
-------------------------

  o Extended the examples
	o Bug fixes

CHANGES IN VERSION 0.99.1
-------------------------

  o inclusion of an additional comparison metric, relating the gene score to the signal strength for genes expressed in only one condition
	o improved documentation of the compData class

CHANGES IN VERSION 0.99.0
-------------------------

  o identical to 0.2.0, renamed for Bioconductor submission

CHANGES IN VERSION 0.2.0
------------------------

  o introduction of a new S4 class (compData) and associated functions
	o more examples, checks and error messages
	o more options for providing user-specified values in the data simulation
	o changed the range of the color palette in the Spearman correlation plots to [-1,1]

CHANGES IN VERSION 0.1.0
------------------------

  o first version
