BatchAdjust |
Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object |
BatchAdjustFromFile |
Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object |
InstallBrainArrayPackage |
Helper function for installing BrainArray packages |
ParseMetaFromGtfFile |
Helper function to parse length and GC content information from a GTF file. |
SCAN |
Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
SCANfast |
Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
SCAN_TwoColor |
Single-Channel Array Normalization (SCAN) for Agilent two-color expression microarrays |
UPC |
Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
UPCfast |
Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
UPC_Generic |
Generic function to apply Universal exPression Codes (UPC) transformation |
UPC_Generic_ExpressionSet |
Generic function to apply Universal exPression Codes (UPC) transformation to ExpressionSet objects |
UPC_RNASeq |
Universal exPression Codes (UPC) for RNA-Seq data |
UPC_RNASeq_Single |
Apply Universal exPression Codes (UPC) transformation to a single RNA-Seq sample |
UPC_TwoColor |
Universal exPression Codes (UPC) for two-channel microarrays |