Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)


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Documentation for package ‘SCAN.UPC’ version 2.50.0

Help Pages

BatchAdjust Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object
BatchAdjustFromFile Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object
InstallBrainArrayPackage Helper function for installing BrainArray packages
ParseMetaFromGtfFile Helper function to parse length and GC content information from a GTF file.
SCAN Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
SCANfast Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
SCAN_TwoColor Single-Channel Array Normalization (SCAN) for Agilent two-color expression microarrays
UPC Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
UPCfast Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
UPC_Generic Generic function to apply Universal exPression Codes (UPC) transformation
UPC_Generic_ExpressionSet Generic function to apply Universal exPression Codes (UPC) transformation to ExpressionSet objects
UPC_RNASeq Universal exPression Codes (UPC) for RNA-Seq data
UPC_RNASeq_Single Apply Universal exPression Codes (UPC) transformation to a single RNA-Seq sample
UPC_TwoColor Universal exPression Codes (UPC) for two-channel microarrays