Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)

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Documentation for package ‘SCAN.UPC’ version 2.50.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BatchAdjust	Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object
BatchAdjustFromFile	Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object
InstallBrainArrayPackage	Helper function for installing BrainArray packages
ParseMetaFromGtfFile	Helper function to parse length and GC content information from a GTF file.
SCAN	Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
SCANfast	Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
SCAN_TwoColor	Single-Channel Array Normalization (SCAN) for Agilent two-color expression microarrays
UPC	Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
UPCfast	Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays
UPC_Generic	Generic function to apply Universal exPression Codes (UPC) transformation
UPC_Generic_ExpressionSet	Generic function to apply Universal exPression Codes (UPC) transformation to ExpressionSet objects
UPC_RNASeq	Universal exPression Codes (UPC) for RNA-Seq data
UPC_RNASeq_Single	Apply Universal exPression Codes (UPC) transformation to a single RNA-Seq sample
UPC_TwoColor	Universal exPression Codes (UPC) for two-channel microarrays