Interactive visualization and manipulation of nested networks


[Up] [Top]

Documentation for package ‘RedeR’ version 3.3.0

Help Pages

addEdgeBetweenContainers Deprecated functions
addEdges addEdges
addEdges-method addEdges
addGraph Adding 'igraph' objects to RedeR
addGraph-method Adding 'igraph' objects to RedeR
addGraphToRedeR Adding 'igraph' objects to RedeR
addLegend.color Deprecated functions
addLegend.shape Deprecated functions
addLegend.size Deprecated functions
addLegendToRedeR Adding graph legends to the RedeR app
addNodes addNodes
addNodes-method addNodes
att.adde Transforming edge and vertex attributes
att.addv Transforming edge and vertex attributes
att.mape Deprecated functions
att.mapv Transforming edge and vertex attributes
att.sete Transforming edge and vertex attributes
att.setv Transforming edge and vertex attributes
calld Call RedeR app from R
calld-method Call RedeR app from R
cea Deprecated functions
deleteEdges deleteEdges
deleteEdges-method deleteEdges
deleteNodes deleteNodes
deleteNodes-method deleteNodes
deleteSelectedEdges Deprecated functions
deleteSelectedNodes Deprecated functions
Deprecated Deprecated functions
deSelectEdges Deprecated functions
deSelectGraph Deprecated functions
deSelectNodes Deprecated functions
ER.limma Pre-processed dataset for RedeR case studies.
exitd Exit the RedeR R-to-Java interface
exitd-method Exit the RedeR R-to-Java interface
exitRedeR Exit the RedeR R-to-Java interface
getContainerComponets Deprecated functions
getEdgeIDs Deprecated functions
getEdges Deprecated functions
getGraph Get graphs from RedeR
getGraph-method Get graphs from RedeR
getGraphFromRedeR Get graphs from RedeR
getNodeIDs Deprecated functions
getNodes Deprecated functions
getSourceEdgeIDs Deprecated functions
getTargetEdgeIDs Deprecated functions
gtoy.rm Deprecated functions
hs.inter Pre-processed igraph object for RedeR case studies.
mergeNodes Deprecated functions
mergeOutEdges mergeOutEdges
mergeOutEdges-method mergeOutEdges
nesthc Deprecated functions
nestNodes nestNodes
nestNodes-method nestNodes
ping Ping RedeR app
ping-method Ping RedeR app
pingRedeR Ping RedeR app
RedeR-data1 Pre-processed igraph object for RedeR case studies.
RedeR-data2 Pre-processed dataset for RedeR case studies.
RedPort Constructor of RedPort-class objects
RedPort-class RedPort: An S4 class for RedeR graphics
relax Relax
relax-method Relax
relaxRedeR Relax
resetd Reset RedeR app
resetd-method Reset RedeR app
resetRedeR Reset RedeR app
selectAllEdges Deprecated functions
selectAllNodes Deprecated functions
selectEdges selectEdges
selectEdges-method selectEdges
selectGraph Deprecated functions
selectNodes selectNodes
selectNodes-method selectNodes
setArrowDirection Deprecated functions
startRedeR Start RedeR app from R
subg Subgraph of a graph
transform.attributes Transforming edge and vertex attributes
updateContainerSize Deprecated functions
updateCoordXY Deprecated functions
updateGraph Deprecated functions
updateLayoutFromRedeR Update graph layout
version Version
version-method Version