box_cox_transformation | Box-Cox Transformation |
cor_pmat | Correlation P-Values |
detect_decimals | Detect decimals |
flattenCorrMatrix | Flatten Correlation Matrix |
PomaBatch | Batch Correction |
PomaBoxplots | Boxplots and Violin Plots |
PomaClust | Cluster Analysis |
PomaCorr | Correlation Analysis |
PomaCreateObject | Create a 'SummarizedExperiment' Object |
PomaDensity | Density Plots |
PomaDESeq | Differential Expression Analysis Based on the Negative Binomial Distribution |
PomaEnrichment | Enrichment Analysis |
PomaHeatmap | Heatmap Plot |
PomaImpute | Impute Missing Values |
PomaLasso | Lasso, Ridge, and Elasticnet Regularized Generalized Linear Models for Binary Outcomes |
PomaLimma | Differential Expression Analysis Using 'limma' |
PomaLM | Linear Models |
PomaLMM | Linear Mixed Models |
PomaNorm | Normalize Data |
PomaOddsRatio | Logistic Regression Model Odds Ratios |
PomaOutliers | Analyse and Remove Statistical Outliers |
PomaPCA | Principal Components Analysis |
PomaPCR | Principal Components Regression |
PomaPLS | Partial Least Squares Methods |
PomaRandForest | Classification Random Forest |
PomaRankProd | Rank Product/Rank Sum Analysis |
PomaUMAP | Dimensionality Reduction with UMAP |
PomaUnivariate | Univariate Statistical Test |
PomaVolcano | Volcano Plot |
poma_pal_c | Return function to interpolate a continuous POMA color palette |
poma_pal_d | Return function to interpolate a discrete POMA color palette |
quantile_norm | Sample Quantile Normalization |
scale_color_poma_c | Color scale constructor for continuous 'viridis' "plasma" palette |
scale_color_poma_d | Color scale constructor for discrete 'viridis' "plasma" palette |
scale_fill_poma_c | Fill scale constructor for continuous 'viridis' "plasma" palette |
scale_fill_poma_d | Fill scale constructor for discrete 'viridis' "plasma" palette |
st000284 | Colorectal Cancer Detection Using Targeted Serum Metabolic Profiling |
st000336 | Targeted LC/MS of urine from boys with DMD and controls |
sum_norm | Sample Sum Normalization |
theme_poma | A ggplot theme which allow custom yet consistent styling of plots in the POMA package and web app. |