Package: ModCon
Type: Package
Title: Modifying splice site usage by changing the mRNP code, while
        maintaining the genetic code
Version: 1.16.0
Authors@R: person("Johannes", "Ptok", role = c("aut", "cre"), email = "Johannes.Ptok@posteo.de", comment = c(ORCID = "0000-0002-0322-5649"))
Description: Collection of functions to calculate a nucleotide sequence surrounding for splice donors sites to either activate or repress donor usage. The proposed alternative nucleotide sequence encodes the same amino acid and could be applied e.g. in reporter systems to silence or activate cryptic splice donor sites.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Depends: data.table, parallel, utils, stats, R (>= 4.1)
Suggests: testthat, knitr, rmarkdown, dplyr, shinycssloaders, shiny,
        shinyFiles, shinydashboard, shinyjs
SystemRequirements: Perl
biocViews: FunctionalGenomics, AlternativeSplicing
URL: https://github.com/caggtaagtat/ModCon
git_url: https://git.bioconductor.org/packages/ModCon
git_branch: RELEASE_3_21
git_last_commit: 2ead6d7
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-15 22:12:41 UTC; biocbuild
Author: Johannes Ptok [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0322-5649>)
Maintainer: Johannes Ptok <Johannes.Ptok@posteo.de>
Built: R 4.5.0; ; 2025-04-16 03:57:10 UTC; unix
