Chromosmal Aberrations Finder in Expression data


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Documentation for package ‘CAFE’ version 1.43.0

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CAFE-package Chromosomal Aberrations Finder in Expression data
armStats Find aberrations with chromosome arm resolution
bandStats Find aberrations with cytoband resolution
CAFE Chromosomal Aberrations Finder in Expression data
CAFE_data CAFE data set
chromosomeStats Find aberrations with whole-chromosome resolution
cliSubset Subset data with a CLI
discontPlot Plot with discontinuous smoother
discontSmooth A discontinuous smoother
facetPlot Plot all chromosomes horizontally next to each other
fisher.method Combines pvalues by using Fisher's method
guiSubset Subset data with a GUI
ProcessCels Processing CEL files
rawPlot Plot without any smoother
slidPlot Plot with sliding average smoother
slidSmooth A moving average smoother