Chromosmal Aberrations Finder in Expression data
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Documentation for package ‘CAFE’ version 1.43.0
Help Pages
| CAFE-package | Chromosomal Aberrations Finder in Expression data |
| armStats | Find aberrations with chromosome arm resolution |
| bandStats | Find aberrations with cytoband resolution |
| CAFE | Chromosomal Aberrations Finder in Expression data |
| CAFE_data | CAFE data set |
| chromosomeStats | Find aberrations with whole-chromosome resolution |
| cliSubset | Subset data with a CLI |
| discontPlot | Plot with discontinuous smoother |
| discontSmooth | A discontinuous smoother |
| facetPlot | Plot all chromosomes horizontally next to each other |
| fisher.method | Combines pvalues by using Fisher's method |
| guiSubset | Subset data with a GUI |
| ProcessCels | Processing CEL files |
| rawPlot | Plot without any smoother |
| slidPlot | Plot with sliding average smoother |
| slidSmooth | A moving average smoother |