Relative quantification using MSstats including:
plots
quantifications (log2fc, pvalues, etc)
normalized abundance values
artmsQuantification( yaml_config_file, data_object = FALSE, printPDF = TRUE, display_msstats = FALSE, verbose = TRUE )
yaml_config_file | (char, required) The yaml file name and location |
---|---|
data_object | (logical) flag to indicate whether the configuration file
is a string to a file that should be opened or config object (yaml).
Default is |
printPDF | (logical) if |
display_msstats | (logical) if |
verbose | (logical) |
The relative quantification of the conditions and comparisons specified in the keys/contrast file resulting from running MSstats, in addition to quality control plots (if selected)
if (FALSE) { artmsQuantification(yaml_config_file = "path/to/artms-ab-config.yaml") }