Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences

---

Documentation for package ‘scifer’ version 1.8.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

df_to_fasta	Fasta file creation from dataframe columns and/or vectors.
fcs_plot	Plot flow data from index sorted cells
fcs_processing	Extract index sorting information from flow cytometry data
igblast	Run IgDiscover for IgBlast using basilisk, which enables the python environment for Igblast
quality_report	Generate general and individualized reports
scifer	Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
secondary_peaks	Check for secondary peaks in a sangerseq object
summarise_abi_file	Create a summary of a single ABI sequencing file
summarise_quality	Generate a summary table containing quality measurements from sanger sequencing abi files