enrichment_interactive | Small Shiny app serving as example for fast enrichment |
exmpl_all | Example set of background genes. |
exmpl_sel | Example set of selected genes. |
fetch_bp | Get functional term data from BioPlanet |
fetch_go | Get Gene Ontology (GO) data |
fetch_go_species | Find all species available from geneontology.org |
fetch_kegg | Get functional term data from KEGG |
fetch_kegg_species | Find all species available from KEGG |
fetch_reactome | Get functional term data from Reactome |
fetch_reactome_species | List of available Reactome species |
fetch_terms_for_example | Create term data for interactive example |
fetch_wiki | Get functional term data from WikiPathways |
fetch_wiki_species | List of available WikiPathways species |
functional_enrichment | Fast Functional Enrichment |
get_feature_terms | Get terms annotating a given feature. |
get_term_features | Get features annotated with a given term. |
go | GO-terms data downloaded for the vignette. |
go_species | GO species |
prepare_for_enrichment | Prepare Term Data for Enrichment Analysis |
remove_cache | Remove all cache |
yeast_de | Differential expression results for yeast RNA-seq. |