Fast functional enrichment for interactive applications
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Documentation for package ‘fenr’ version 1.4.2
Help Pages
| enrichment_interactive | Small Shiny app serving as example for fast enrichment |
| exmpl_all | Example set of background genes. |
| exmpl_sel | Example set of selected genes. |
| fetch_bp | Get functional term data from BioPlanet |
| fetch_go | Get Gene Ontology (GO) data |
| fetch_go_species | Find all species available from geneontology.org |
| fetch_kegg | Get functional term data from KEGG |
| fetch_kegg_species | Find all species available from KEGG |
| fetch_reactome | Get functional term data from Reactome |
| fetch_reactome_species | List of available Reactome species |
| fetch_terms_for_example | Create term data for interactive example |
| fetch_wiki | Get functional term data from WikiPathways |
| fetch_wiki_species | List of available WikiPathways species |
| functional_enrichment | Fast Functional Enrichment |
| get_feature_terms | Get terms annotating a given feature. |
| get_term_features | Get features annotated with a given term. |
| go | GO-terms data downloaded for the vignette. |
| go_species | GO species |
| prepare_for_enrichment | Prepare Term Data for Enrichment Analysis |
| remove_cache | Remove all cache |
| yeast_de | Differential expression results for yeast RNA-seq. |