Predict open reading frames in nucleotide sequences


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Documentation for package ‘ORFhunteR’ version 1.14.0

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annotateORFs Annotate open reading frames
classifyORFsCandidates Classify the pseudo and true ORF candidates derived from RNA molecules
codonStartStop Identify all potential start and stop codons in a nucleotide sequence
findORFs Identify all variants of open reading frames in a nucleotide sequence
findPTCs Identify the premature termination codons in nucleotide sequences
getSeqORFs Extract the sequences of identified open reading frames
loadTrExper Load a set of transcripts
predictORF Predict the true ORFs in mRNA molecules
translateORFs Translate open reading frames to proteins
vectorizeORFs Vectorize the ORF(-s) sequence(-s) to sequence features