annotateORFs |
Annotate open reading frames |
classifyORFsCandidates |
Classify the pseudo and true ORF candidates derived from RNA molecules |
codonStartStop |
Identify all potential start and stop codons in a nucleotide sequence |
findORFs |
Identify all variants of open reading frames in a nucleotide sequence |
findPTCs |
Identify the premature termination codons in nucleotide sequences |
getSeqORFs |
Extract the sequences of identified open reading frames |
loadTrExper |
Load a set of transcripts |
predictORF |
Predict the true ORFs in mRNA molecules |
translateORFs |
Translate open reading frames to proteins |
vectorizeORFs |
Vectorize the ORF(-s) sequence(-s) to sequence features |