Bioconductor on the AnVIL compute environment


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Documentation for package ‘AnVIL’ version 1.18.5

Help Pages

$-method RESTful services useful for AnVIL developers
.DollarNames.Service RESTful services useful for AnVIL developers
.gadget_run Functions to implement AnVIL gadget interfaces
add_libpaths Utilities for managing library paths
AnVIL-defunct Defunct AnVIL functionality
av-deprecated TABLE, DATA, files, bucket, runtime, and disk elements
avbucket TABLE, DATA, files, bucket, runtime, and disk elements
avdata TABLE, DATA, files, bucket, runtime, and disk elements
avdata_import TABLE, DATA, files, bucket, runtime, and disk elements
avdisks TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_backup TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_ls TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_restore TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_rm TABLE, DATA, files, bucket, runtime, and disk elements
avruntime TABLE, DATA, files, bucket, runtime, and disk elements
avruntimes TABLE, DATA, files, bucket, runtime, and disk elements
avtable_gadget Graphical user interfaces for common AnVIL operations
avtable_import_status TABLE, DATA, files, bucket, runtime, and disk elements
avtable_paged TABLE, DATA, files, bucket, runtime, and disk elements
avworkflow Workflow configuration
avworkflows Workflow submissions and file outputs
avworkflows-deprecated Workflow submissions and file outputs
avworkflow_config-deprecated Workflow configuration
avworkflow_configurations Workflow configuration
avworkflow_configuration_get Workflow configuration
avworkflow_configuration_inputs Workflow configuration
avworkflow_configuration_outputs Workflow configuration
avworkflow_configuration_set Workflow configuration
avworkflow_configuration_template Workflow configuration
avworkflow_configuration_update Workflow configuration
avworkflow_files Workflow submissions and file outputs
avworkflow_gadget Graphical user interfaces for common AnVIL operations
avworkflow_info Workflow submissions and file outputs
avworkflow_localize Workflow submissions and file outputs
avworkflow_name Workflow configuration
avworkflow_namespace Workflow configuration
avworkflow_run Workflow submissions and file outputs
avworkflow_stop Workflow submissions and file outputs
avworkspace_gadget Graphical user interfaces for common AnVIL operations
browse_workspace Graphical user interfaces for common AnVIL operations
delocalize Copy packages, folders, or files to or from google buckets
Dockstore RESTful services useful for AnVIL developers
Dockstore-class RESTful services useful for AnVIL developers
drs-deprecated DRS (Data Repository Service) URL management
drs_access_url DRS (Data Repository Service) URL management
drs_cp DRS (Data Repository Service) URL management
drs_stat DRS (Data Repository Service) URL management
empty_object RESTful services useful for AnVIL developers
gcloud gcloud command line utility interface
gcloud-deprecated gcloud command line utility interface
gcloud_account gcloud command line utility interface
gcloud_cmd gcloud command line utility interface
gcloud_exists gcloud command line utility interface
gcloud_help gcloud command line utility interface
gcloud_project gcloud command line utility interface
gcloud_storage gcloud command line utility interface
gcloud_storage_buckets gcloud command line utility interface
gsutil gsutil command line utility interface
gsutil-deprecated gsutil command line utility interface
gsutil_cat gsutil command line utility interface
gsutil_cp gsutil command line utility interface
gsutil_exists gsutil command line utility interface
gsutil_help gsutil command line utility interface
gsutil_ls gsutil command line utility interface
gsutil_pipe gsutil command line utility interface
gsutil_requesterpays gsutil command line utility interface
gsutil_rm gsutil command line utility interface
gsutil_rsync gsutil command line utility interface
gsutil_stat gsutil command line utility interface
Leonardo RESTful services useful for AnVIL developers
Leonardo-class RESTful services useful for AnVIL developers
localize Copy packages, folders, or files to or from google buckets
localize-deprecated Copy packages, folders, or files to or from google buckets
operations RESTful services useful for AnVIL developers
operations-method RESTful services useful for AnVIL developers
print.avworkflow_configuration Workflow configuration
print.repository_stats Defunct AnVIL functionality
Rawls RESTful services useful for AnVIL developers
Rawls-class RESTful services useful for AnVIL developers
repository_stats Defunct AnVIL functionality
schemas RESTful services useful for AnVIL developers
schemas-method RESTful services useful for AnVIL developers
Service RESTful service constructor
Service-class RESTful services useful for AnVIL developers
Services RESTful services useful for AnVIL developers
show-method RESTful services useful for AnVIL developers
tags RESTful services useful for AnVIL developers
TDR RESTful services useful for AnVIL developers
TDR-class RESTful services useful for AnVIL developers
Terra RESTful services useful for AnVIL developers
Terra-class RESTful services useful for AnVIL developers
utilities Utilities for managing library paths