Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful


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Documentation for package ‘rawDiag’ version 1.2.0

Help Pages

.calculatioMasterScan Calculate Master Scan Number
.cycleTime Calculate MS Cycle Time
.fillNAgaps Fill NA values with last previous value
buildRawDiagShinyApp Build the rawDiag shiny application
checkRawrr Checks Bioconductor installation instructions
is.rawDiag Is an Object an rawDiag Object?
PlotChargeState Charge State Overview Plot
plotChargeState Charge State Overview Plot
PlotCycleLoad Cycle Load Plot
plotCycleLoad Cycle Load Plot
PlotCycleTime Plot Cycle Time
plotCycleTime Plot Cycle Time
PlotInjectionTime Plot Injection Time
plotInjectionTime Plot Injection Time
PlotLockMassCorrection Lock Mass Correction Plot
plotLockMassCorrection Lock Mass Correction Plot
PlotMassDistribution Mass Distribution Plot
plotMassDistribution Mass Distribution Plot
PlotMzDistribution mZ Distribution Plot of Ms2 Scans
plotMzDistribution mZ Distribution Plot of Ms2 Scans
PlotPrecursorHeatmap Precursor Mass versus StartTime MS2 based hexagons
plotPrecursorHeatmap Precursor Mass versus StartTime MS2 based hexagons
PlotScanTime Scan Event Plot
plotScanTime Scan Event Plot
PlotTicBasepeak Total Ion Count and Base Peak Plot
plotTicBasepeak Total Ion Count and Base Peak Plot
rawDiag Reads selected raw file trailer information for rawDiag plot functions
rawDiagServer rawDiag shiny module
rawDiagUI rawDiag shiny module UI
readRaw Reads selected raw file trailer information for rawDiag plot functions