Package: oposSOM
Title: Comprehensive analysis of transcriptome data
Version: 2.24.0
Description: This package translates microarray expression data into metadata
  of reduced dimension. It provides various sample-centered and group-centered
  visualizations, sample similarity analyses and functional enrichment analyses.
  The underlying SOM algorithm combines feature clustering, multidimensional
  scaling and dimension reduction, along with strong visualization capabilities.
  It enables extraction and description of functional expression modules inherent
  in the data.
Depends: R (>= 4.0.0), igraph (>= 1.0.0)
Imports: fastICA, tsne, scatterplot3d, pixmap, fdrtool, ape, biomaRt,
        Biobase, RcppParallel, Rcpp, methods, graph, XML, png, RCurl
LinkingTo: RcppParallel, Rcpp
License: GPL (>=2)
Author: Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>, Hoang Thanh Le <le@izbi.uni-leipzig.de> and Martin Kalcher <mkalcher@porkbox.net>
Maintainer: Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>
URL: http://som.izbi.uni-leipzig.de
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
        DataRepresentation, Visualization
git_url: https://git.bioconductor.org/packages/oposSOM
git_branch: RELEASE_3_20
git_last_commit: 488c7f6
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-11-08
NeedsCompilation: yes
Packaged: 2024-11-08 23:27:29 UTC; biocbuild
Built: R 4.4.1; aarch64-apple-darwin20; 2024-11-09 22:03:04 UTC; unix
