Package: knowYourCG
Type: Package
Title: Functional analysis of DNA methylome datasets
Version: 1.2.5
Authors@R: c(person("Zhou", "Wanding", role=c("aut"),
             email="ZHOUW3@chop.edu"),
             person("Goldberg", "David", role=c("aut","cre"),
             email="golddc72@pennmedicine.upenn.edu",
             comment=c(ORCID="0000-0002-9622-4708")),
             person("Fu","Hongxiang",role=c("ctb"),
             email="hongxiang23@ucla.edu"),
             person("Moyer","Ethan",role=c("ctb"),
             email="ejm374@drexel.edu")
             )
Description: knowYourCG automates the functional analysis of DNA 
    methylation data. The package tests the enrichment of discrete CpG probes 
    across thousands of curated biological and technical features. GSEA-like 
    analysis can be performed on continuous methylation data query sets. 
    knowYourCG can also take beta matrices as input to perform feature 
    aggregation over the curated database sets.
Depends: R (>= 4.4.0)
URL: https://github.com/zhou-lab/knowYourCG
BugReports: https://github.com/zhou-lab/knowYourCG/issues
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2
Imports: sesameData, dplyr, methods, rlang, GenomicRanges, IRanges,
        reshape2, S4Vectors, stats, stringr, utils, ggplot2, ggrepel,
        tibble, wheatmap, magrittr
biocViews: Epigenetics, DNAMethylation, MethylationArray
Suggests: testthat (>= 3.0.0), SummarizedExperiment, rmarkdown, knitr,
        sesame, gprofiler2
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/knowYourCG
git_branch: RELEASE_3_20
git_last_commit: 200fa49
git_last_commit_date: 2024-12-30
Repository: Bioconductor 3.20
Date/Publication: 2024-12-30
NeedsCompilation: no
Packaged: 2024-12-31 07:09:09 UTC; biocbuild
Author: Zhou Wanding [aut],
  Goldberg David [aut, cre] (<https://orcid.org/0000-0002-9622-4708>),
  Fu Hongxiang [ctb],
  Moyer Ethan [ctb]
Maintainer: Goldberg David <golddc72@pennmedicine.upenn.edu>
Built: R 4.4.2; ; 2025-01-01 20:13:54 UTC; unix
