envPirat | Creates a BasiliskEnvironment class |
estimate_gamma | Estimate missingness parameters Gamma |
estimate_psi_df | Estimate psi and degrees of freedom |
get_indexes_embedded_prots | Indexes of PGs embedded in each others |
impute_block_llk_reset | Impute each PG. |
impute_block_llk_reset_PG | Impute each PG. |
impute_from_blocks | Impute abundance table from PGs results |
my_pipeline_llkimpute | Pirat imputation function |
pipeline_llkimpute | Pirat imputation function |
pirat2SE | COnvert Pirat dataset to SummarizedExperiment |
plot2hists | Plot 2 histograms |
plot_pep_correlations | Empirical density of peptide correlations |
rm_pg_from_idx_merge_pg | Remove PGs by index and merge |
ropers | Ropers dataset |
split_large_pg | Split too large PGs |
split_large_pg_PG | Splits too large PGs in proteogenomics context |
subbouyssie | Sub-Bouyssie dataset |
subropers | Sub-Ropers dataset |
wrapper_pipeline_llkimpute | Imputation method using SummarizedExperiment dataset |