Precursor or Peptide Imputation under Random Truncation


[Up] [Top]

Documentation for package ‘Pirat’ version 1.0.3

Help Pages

envPirat Creates a BasiliskEnvironment class
estimate_gamma Estimate missingness parameters Gamma
estimate_psi_df Estimate psi and degrees of freedom
get_indexes_embedded_prots Indexes of PGs embedded in each others
impute_block_llk_reset Impute each PG.
impute_block_llk_reset_PG Impute each PG.
impute_from_blocks Impute abundance table from PGs results
my_pipeline_llkimpute Pirat imputation function
pipeline_llkimpute Pirat imputation function
pirat2SE COnvert Pirat dataset to SummarizedExperiment
plot2hists Plot 2 histograms
plot_pep_correlations Empirical density of peptide correlations
rm_pg_from_idx_merge_pg Remove PGs by index and merge
ropers Ropers dataset
split_large_pg Split too large PGs
split_large_pg_PG Splits too large PGs in proteogenomics context
subbouyssie Sub-Bouyssie dataset
subropers Sub-Ropers dataset
wrapper_pipeline_llkimpute Imputation method using SummarizedExperiment dataset