Precursor or Peptide Imputation under Random Truncation
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Documentation for package ‘Pirat’ version 1.0.3
Help Pages
| envPirat | Creates a BasiliskEnvironment class |
| estimate_gamma | Estimate missingness parameters Gamma |
| estimate_psi_df | Estimate psi and degrees of freedom |
| get_indexes_embedded_prots | Indexes of PGs embedded in each others |
| impute_block_llk_reset | Impute each PG. |
| impute_block_llk_reset_PG | Impute each PG. |
| impute_from_blocks | Impute abundance table from PGs results |
| my_pipeline_llkimpute | Pirat imputation function |
| pipeline_llkimpute | Pirat imputation function |
| pirat2SE | COnvert Pirat dataset to SummarizedExperiment |
| plot2hists | Plot 2 histograms |
| plot_pep_correlations | Empirical density of peptide correlations |
| rm_pg_from_idx_merge_pg | Remove PGs by index and merge |
| ropers | Ropers dataset |
| split_large_pg | Split too large PGs |
| split_large_pg_PG | Splits too large PGs in proteogenomics context |
| subbouyssie | Sub-Bouyssie dataset |
| subropers | Sub-Ropers dataset |
| wrapper_pipeline_llkimpute | Imputation method using SummarizedExperiment dataset |