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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABAData")
In most cases, you don't need to download the package archive at all.
ABAData
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ABAData.
Averaged gene expression in human brain regions from Allen Brain Atlas
Bioconductor version: 3.2
Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.
Author: Steffi Grote
Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>
Citation (from within R,
enter citation("ABAData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABAData")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABAData")
| HTML | ABAData: gene expression data to use with enrichment analysis package ABAEnrichment | |
| Reference Manual |
Details
| biocViews | ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData |
| Version | 1.0.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.2) |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | ABAEnrichment |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ABAData_1.0.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/ABAData/ |
| Package Downloads Report | Download Stats |
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