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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")
In most cases, you don't need to download the package archive at all.
wateRmelon
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see wateRmelon.
Illumina 450 methylation array normalization and metrics
Bioconductor version: 3.2
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.
Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic
Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>
Citation (from within R,
enter citation("wateRmelon")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wateRmelon")
| Package | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19 |
| Imports | |
| LinkingTo | |
| Suggests | RPMM |
| SystemRequirements | |
| Enhances | minfi, methylumi, IMA |
| URL | |
| Depends On Me | skewr |
| Imports Me | ChAMP, ENmix |
| Suggests Me | RnBeads |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | wateRmelon_1.10.0.tar.gz |
| Windows Binary | wateRmelon_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | wateRmelon_1.10.0.tgz |
| Mac OS X 10.9 (Mavericks) | wateRmelon_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/wateRmelon/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/wateRmelon/ |
| Package Downloads Report | Download Stats |
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