- Home
- Bioconductor 3.2
- Software Packages
- proBAMr
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")
In most cases, you don't need to download the package archive at all.
proBAMr
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see proBAMr.
Generating SAM file for PSMs in shotgun proteomics data
Bioconductor version: 3.2
Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R,
enter citation("proBAMr")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proBAMr")
| Introduction to proBAMr | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, Software, Visualization |
| Version | 1.4.3 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.1), IRanges, AnnotationDbi |
| Imports | GenomicRanges, Biostrings, GenomicFeatures, rtracklayer |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | proBAMr_1.4.3.tar.gz |
| Windows Binary | proBAMr_1.4.3.zip |
| Mac OS X 10.6 (Snow Leopard) | proBAMr_1.4.0.tgz |
| Mac OS X 10.9 (Mavericks) | proBAMr_1.4.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/proBAMr/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/proBAMr/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
