To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genotypeeval")

In most cases, you don't need to download the package archive at all.

genotypeeval

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see genotypeeval.

QA/QC of a gVCF or VCF file

Bioconductor version: 3.2

Takes in a gVCF or VCF and reports metrics to assess quality of calls.

Author: Jennifer Tom [aut, cre]

Maintainer: Jennifer Tom <tom.jennifer at gene.com>

Citation (from within R, enter citation("genotypeeval")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genotypeeval")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genotypeeval")

biocViews	BatchEffect, DataImport, Genetics, SNP, Sequencing, Software, VariantAnnotation
Version	1.0.0
In Bioconductor since	BioC 3.2 (R-3.2) (0.5 years)
License	file LICENSE
Depends	R (>= 3.2.0), VariantAnnotation
Imports	ggplot2, rtracklayer, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, methods, BiocParallel
LinkingTo
Suggests	knitr, testthat, SNPlocs.Hsapiens.dbSNP141.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	genotypeeval_1.0.0.tar.gz
Windows Binary	genotypeeval_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	genotypeeval_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	genotypeeval_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/genotypeeval/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/genotypeeval/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: