To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TRONCO")
In most cases, you don't need to download the package archive at all.
TRONCO
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see TRONCO.
TRONCO, an R package for TRanslational ONCOlogy
Bioconductor version: 3.2
TRONCO is an R package for the inference of cancer progression models from heterogeneous genomic data.
Author: Marco Antoniotti [cph], Giulio Caravagna [aut, cre], Luca De Sano [aut], Alex Graudenzi [aut], Ilya Korsunsky [cph], Mattia Longoni [ctb], Loes Olde Loohuis [cph], Giancarlo Mauri [cph], Bud Mishra [cph], Daniele Ramazzotti [aut]
Maintainer: BIMIB Group <tronco at disco.unimib.it>
Citation (from within R,
enter citation("TRONCO")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TRONCO")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TRONCO")
| An R Package for TRanslational ONCOlogy | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Cancer, Software |
| Version | 2.2.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | GPL (>= 3.0) |
| Depends | R (>= 3.1), doParallel, bnlearn |
| Imports | Rgraphviz, ggplot2, RColorBrewer, reshape2, cgdsr, igraph, grid, gridExtra, xtable, gtable, scales |
| LinkingTo | |
| Suggests | BiocGenerics, BiocStyle, testthat, R.matlab |
| SystemRequirements | |
| Enhances | |
| URL | https://sites.google.com/site/troncopackage/ |
| BugReports | https://github.com/BIMIB-DISCo/TRONCO |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TRONCO_2.2.0.tar.gz |
| Windows Binary | TRONCO_2.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | TRONCO_2.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | TRONCO_2.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/TRONCO/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/TRONCO/ |
| Package Downloads Report | Download Stats |
Documentation »
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