To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PGSEA")

In most cases, you don't need to download the package archive at all.

PGSEA

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

Bioconductor version: 3.2

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PGSEA")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

PDF		HOWTO: PGSEA
PDF		HOWTO: PGSEA Example Workflow
PDF		Reference Manual

biocViews	Microarray, Software
Version	1.44.0
In Bioconductor since	BioC 2.0 (R-2.5) (9 years)
License	GPL-2
Depends	R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
LinkingTo
Suggests	GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
SystemRequirements
Enhances
URL
Depends On Me	GeneExpressionSignature
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	PGSEA_1.44.0.tar.gz
Windows Binary	PGSEA_1.44.0.zip
Mac OS X 10.6 (Snow Leopard)	PGSEA_1.44.0.tgz
Mac OS X 10.9 (Mavericks)	PGSEA_1.44.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/PGSEA/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/PGSEA/
Package Downloads Report	Download Stats

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