To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAFE")

In most cases, you don't need to download the package archive at all.

CAFE

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: 3.2

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAFE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

 

PDF Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version 1.6.0
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
LinkingTo
Suggests RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CAFE_1.6.0.tar.gz
Windows Binary CAFE_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) CAFE_1.6.0.tgz
Mac OS X 10.9 (Mavericks) CAFE_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CAFE/tree/release-3.2
Package Short Url http://bioconductor.org/packages/CAFE/
Package Downloads Report Download Stats

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