gQTLBase-package |
gQTLBase: infrastructure for eQTL, mQTL and similar studies |
balancedFeatList |
split featurenames of SummarizedExperiment according to tiling, or to achieve simple balance within seqnames |
ciseStore |
Class '"ciseStore"' |
ciseStore-class |
Class '"ciseStore"' |
describeByFilts |
collect basic descriptive statistics on ciseStore instances |
describeStore |
collect basic descriptive statistics on ciseStore instances |
extractByProbes |
retrieve eqtlTest results from a ciseStore instance |
extractByProbes-method |
retrieve eqtlTest results from a ciseStore instance |
extractByRanges |
retrieve eqtlTest results from a ciseStore instance |
extractByRanges-method |
retrieve eqtlTest results from a ciseStore instance |
extractBySymbols |
retrieve eqtlTest results from a ciseStore instance |
extractBySymbols-method |
retrieve eqtlTest results from a ciseStore instance |
gQTLBase |
gQTLBase: infrastructure for eQTL, mQTL and similar studies |
loadAndFilterResult |
use batchMapResults infrastructure to process results in a ciseStore instance |
matprint |
gQTLBase: infrastructure for eQTL, mQTL and similar studies |
mergeCIstates |
merge ChromImpute chromatin states, or GWAS hit indicators, to a GRanges |
mergeGWhits |
merge ChromImpute chromatin states, or GWAS hit indicators, to a GRanges |
show |
collect basic descriptive statistics on ciseStore instances |
show-method |
Class '"ciseStore"' |
show-method |
collect basic descriptive statistics on ciseStore instances |
storeApply |
apply a function over job results in a ciseStore instance |
storeDescription-class |
collect basic descriptive statistics on ciseStore instances |
storeMapResults |
use batchMapResults infrastructure to process results in a ciseStore instance |
storeToFf |
extract a vector from store results as ff (out of memory reference); support statistical reductions |
ufeatByTiling |
split featurenames of SummarizedExperiment according to tiling, or to achieve simple balance within seqnames |