# R Interface to epiviz web app

## Documentation for package ‘epivizr’ version 1.8.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

class:EpivizBlockData | 'EpivizBlockData' objects
class:EpivizBpData | 'EpivizBpData' objects
class:EpivizChart | 'EpivizChart' objects
class:EpivizData | 'EpivizData' objects
class:EpivizDataCache | Virtual class for data cache used by Epiviz.
class:EpivizDevice | 'EpivizDevice' objects
class:EpivizDeviceMgr | 'EpivizDeviceMgr' objects
class:EpivizFeatureData | 'EpivizFeatureData' objects
class:EpivizGeneInfoData-class | 'EpivizGeneInfoData' objects
class:EpivizServer | EpivizServer objects
class:EpivizTrackData | 'EpivizTrackData' objects
class:EpivizWigCache | Cache for BigWig files
class:EpivizWigData | Container for data read from external BigWig files
class:IndexedArray | Indexed array
class:Queue | A Queue
colonSE | Example exon-level RNAseq data from TCGA project for epivizr.
colon_blocks | Example methylation data for epivizr vignette
colon_curves | Example methylation data for epivizr vignette
EpivizBlockData-class | 'EpivizBlockData' objects
EpivizBpData-class | 'EpivizBpData' objects
EpivizChart-class | 'EpivizChart' objects
EpivizData-class | 'EpivizData' objects
EpivizDataCache-class | Virtual class for data cache used by Epiviz.
EpivizDevice-class | 'EpivizDevice' objects
EpivizDeviceMgr | 'EpivizDeviceMgr' objects
EpivizDeviceMgr-class | 'EpivizDeviceMgr' objects
EpivizFeatureData-class | 'EpivizFeatureData' objects
EpivizGeneInfoData-class | 'EpivizGeneInfoData' objects
EpivizServer-class | EpivizServer objects
EpivizTrackData-class | 'EpivizTrackData' objects
EpivizWigCache-class | Cache for BigWig files
EpivizWigData-class | Container for data read from external BigWig files
IndexedArray-class | Indexed array
makeGeneTrackAnnotation | Create a gene annotation object to use as gene track on the epiviz UI.
Queue-class | A Queue
register-method | Encapsulate data object in Epiviz
register-methods | Encapsulate data object in Epiviz
startEpiviz | Start the epiviz interface
startStandalone | Start the standalone epiviz interface
tcga_colon_example | Example methylation data for epivizr vignette
tcga_colon_expression | Example exon-level RNAseq data from TCGA project for epivizr.