Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling


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Documentation for package ‘biosvd’ version 2.6.0

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biosvd-package Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
apply The Eigensystem class
assayColorMap The EigensystemPlotParam class
assayColorMap<- Set assayColorMap for object of EigensystemPlotParam
assaycorrelations The Eigensystem class
assayMatrix The Eigensystem class
biosvd Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
colorIdFeatures The Eigensystem class
compute Compute the eigensystem for a feature by assay matrix
compute-method Compute the eigensystem for a feature by assay matrix
contrast The EigensystemPlotParam class
contrast<- Set contrast for object of EigensystemPlotParam
eigenassays The Eigensystem class
eigenexpressions The Eigensystem class
eigenfeatures The Eigensystem class
Eigensystem The Eigensystem class
Eigensystem-class The Eigensystem class
EigensystemPlotParam The EigensystemPlotParam class
EigensystemPlotParam-class The EigensystemPlotParam class
entropy The Eigensystem class
exclude Excludes specified eigenfeatures/eigenassays from the data
exclude-method Excludes specified eigenfeatures/eigenassays from the data
excludeEigenfeatures The Eigensystem class
featureColorMap The EigensystemPlotParam class
featureColorMap<- Set featureColorMap for object of EigensystemPlotParam
featurecorrelations The Eigensystem class
featureMatrix The Eigensystem class
figure The EigensystemPlotParam class
figure<- Set figure for object of EigensystemPlotParam
filenames The EigensystemPlotParam class
filenames<- Set filenames for object of EigensystemPlotParam
fractions The Eigensystem class
HeLaData Human HeLa Cell Cycle Expression
matrix The Eigensystem class
negativeValues The EigensystemPlotParam class
negativeValues<- Set negativeValues for object of EigensystemPlotParam
palette The EigensystemPlotParam class
palette<- Set palette for object of EigensystemPlotParam
path The EigensystemPlotParam class
path<- Set path for object of EigensystemPlotParam
plot Generate visualizations of the eigensystem
plot-method Generate visualizations of the eigensystem
plots The EigensystemPlotParam class
plots<- Set plots for object of EigensystemPlotParam
prefix The EigensystemPlotParam class
prefix<- Set prefix for object of EigensystemPlotParam
project Projects the data onto one or two eigenfeatures and eigenassays
project-method Projects the data onto one or two eigenfeatures and eigenassays
report Creates a report of the eigensystem
report-method Creates a report of the eigensystem
show-method The Eigensystem class
show-method The EigensystemPlotParam class
signMatrix The Eigensystem class
StarvationData Human HeLa Cell Cycle Expression
whichAssays The EigensystemPlotParam class
whichAssays<- Set whichAssays for object of EigensystemPlotParam
whichEigenassays The EigensystemPlotParam class
whichEigenassays<- Set whichEigenassays for object of EigensystemPlotParam
whichEigenfeatures The EigensystemPlotParam class
whichEigenfeatures<- Set whichEigenfeatures for object of EigensystemPlotParam
whichFeatures The EigensystemPlotParam class
whichFeatures<- Set whichFeatures for object of EigensystemPlotParam
whichPolarAxes The EigensystemPlotParam class
whichPolarAxes<- Set whichPolarAxes for object of EigensystemPlotParam
YeastData Yeast Cell Cycle Expression