biosvd-package | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling |
apply | The Eigensystem class |
assayColorMap | The EigensystemPlotParam class |
assayColorMap<- | Set assayColorMap for object of EigensystemPlotParam |
assaycorrelations | The Eigensystem class |
assayMatrix | The Eigensystem class |
biosvd | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling |
colorIdFeatures | The Eigensystem class |
compute | Compute the eigensystem for a feature by assay matrix |
compute-method | Compute the eigensystem for a feature by assay matrix |
contrast | The EigensystemPlotParam class |
contrast<- | Set contrast for object of EigensystemPlotParam |
eigenassays | The Eigensystem class |
eigenexpressions | The Eigensystem class |
eigenfeatures | The Eigensystem class |
Eigensystem | The Eigensystem class |
Eigensystem-class | The Eigensystem class |
EigensystemPlotParam | The EigensystemPlotParam class |
EigensystemPlotParam-class | The EigensystemPlotParam class |
entropy | The Eigensystem class |
exclude | Excludes specified eigenfeatures/eigenassays from the data |
exclude-method | Excludes specified eigenfeatures/eigenassays from the data |
excludeEigenfeatures | The Eigensystem class |
featureColorMap | The EigensystemPlotParam class |
featureColorMap<- | Set featureColorMap for object of EigensystemPlotParam |
featurecorrelations | The Eigensystem class |
featureMatrix | The Eigensystem class |
figure | The EigensystemPlotParam class |
figure<- | Set figure for object of EigensystemPlotParam |
filenames | The EigensystemPlotParam class |
filenames<- | Set filenames for object of EigensystemPlotParam |
fractions | The Eigensystem class |
HeLaData | Human HeLa Cell Cycle Expression |
matrix | The Eigensystem class |
negativeValues | The EigensystemPlotParam class |
negativeValues<- | Set negativeValues for object of EigensystemPlotParam |
palette | The EigensystemPlotParam class |
palette<- | Set palette for object of EigensystemPlotParam |
path | The EigensystemPlotParam class |
path<- | Set path for object of EigensystemPlotParam |
plot | Generate visualizations of the eigensystem |
plot-method | Generate visualizations of the eigensystem |
plots | The EigensystemPlotParam class |
plots<- | Set plots for object of EigensystemPlotParam |
prefix | The EigensystemPlotParam class |
prefix<- | Set prefix for object of EigensystemPlotParam |
project | Projects the data onto one or two eigenfeatures and eigenassays |
project-method | Projects the data onto one or two eigenfeatures and eigenassays |
report | Creates a report of the eigensystem |
report-method | Creates a report of the eigensystem |
show-method | The Eigensystem class |
show-method | The EigensystemPlotParam class |
signMatrix | The Eigensystem class |
StarvationData | Human HeLa Cell Cycle Expression |
whichAssays | The EigensystemPlotParam class |
whichAssays<- | Set whichAssays for object of EigensystemPlotParam |
whichEigenassays | The EigensystemPlotParam class |
whichEigenassays<- | Set whichEigenassays for object of EigensystemPlotParam |
whichEigenfeatures | The EigensystemPlotParam class |
whichEigenfeatures<- | Set whichEigenfeatures for object of EigensystemPlotParam |
whichFeatures | The EigensystemPlotParam class |
whichFeatures<- | Set whichFeatures for object of EigensystemPlotParam |
whichPolarAxes | The EigensystemPlotParam class |
whichPolarAxes<- | Set whichPolarAxes for object of EigensystemPlotParam |
YeastData | Yeast Cell Cycle Expression |