Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.10.1
Date: 2016-02-24
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: parallel, GenomicRanges (>= 1.13.3), Rbowtie
Imports: methods, zlibbioc, BiocGenerics, S4Vectors, IRanges,
        BiocInstaller, Biobase, Biostrings, BSgenome, Rsamtools (>=
        1.19.38), GenomicFeatures (>= 1.17.13), ShortRead (>= 1.19.1),
        GenomicAlignments, BiocParallel, GenomeInfoDb, rtracklayer,
        GenomicFiles
Suggests: Gviz, RUnit, BiocStyle
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification
        and analysis of Short Reads. It covers a complete workflow
        starting from raw sequence reads, over creation of alignments
        and quality control plots, to the quantification of genomic
        regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq, Coverage, Alignment, QualityControl
Archs: x64
NeedsCompilation: yes
Packaged: 2016-02-25 03:28:26 UTC; biocbuild
Built: R 3.2.3; x86_64-apple-darwin13.4.0; 2016-02-25 13:47:48 UTC; unix
