allFitnessEffects |
Create fitness effects specification from restrictions, epistasis, and order effects. |
evalAllGenotypes |
Evaluate fitness of one or all possible genotypes. |
evalGenotype |
Evaluate fitness of one or all possible genotypes. |
examplePosets |
Example posets |
examplesFitnessEffects |
Examples of fitness effects |
mcfLs |
mcfLs simulation from the vignette |
oncoSimulIndiv |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |
oncoSimulPop |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |
oncoSimulSample |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |
plot.fitnessEffects |
Plot fitnessEffects objects. |
plot.oncosimul |
Plot simulated tumor progression data. |
plot.oncosimulpop |
Plot simulated tumor progression data. |
plotClonePhylog |
Plot a phylogeny of the clones. |
plotPoset |
Plot a poset. |
poset |
Poset |
print.oncosimul |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |
print.oncosimulpop |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |
samplePop |
Obtain a sample from a population of simulations. |
simOGraph |
Simulate oncogenetic/CBN/XMPN DAGs. |
summary.oncosimul |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |
summary.oncosimulpop |
Simulate tumor progression for one or more individuals, optionally returning just a sample in time. |