BamFileViews | Views into a set of BAM files |
BamFileViews-class | Views into a set of BAM files |
BamFileViews-method | Views into a set of BAM files |
BigWigFileViews | Views into a set of BigWig files |
BigWigFileViews-class | Views into a set of BigWig files |
BigWigFileViews-method | Views into a set of BigWig files |
class:GenomicFiles | GenomicFiles objects |
class:GenomicFileViews | Views into a set of files |
colData<--method | GenomicFiles objects |
countBam-method | Views into a set of BAM files |
coverage-method | Views into a set of BigWig files |
dim-method | Views into a set of files |
dimnames-method | Views into a set of files |
dimnames<--method | Views into a set of files |
FaFileViews | Views into a set of Fasta files |
FaFileViews-class | Views into a set of Fasta files |
FaFileViews-method | Views into a set of Fasta files |
fileExperiment | Views into a set of files |
fileExperiment<- | Views into a set of files |
fileList | Views into a set of files |
fileList<- | Views into a set of files |
fileRange | Views into a set of files |
fileRange<- | Views into a set of files |
files | GenomicFiles objects |
files-method | GenomicFiles objects |
files<- | GenomicFiles objects |
files<--method | GenomicFiles objects |
fileSample | Views into a set of files |
fileSample<- | Views into a set of files |
findTypeRegistry | Functions for creating and searching a registry of file types. |
GenomicFiles | GenomicFiles objects |
GenomicFiles-class | GenomicFiles objects |
GenomicFiles-method | GenomicFiles objects |
GenomicFileViews | Views into a set of files |
GenomicFileViews-class | Views into a set of files |
isPacked | Range transformations of a 'GenomicRanges' object for optimal file queries. |
makeFileType | Functions for creating and searching a registry of file types. |
names-method | Views into a set of files |
names<--method | Views into a set of files |
pack | Range transformations of a 'GenomicRanges' object for optimal file queries. |
pack-method | Range transformations of a 'GenomicRanges' object for optimal file queries. |
reduceByFile | Parallel computations by files |
reduceByFile-method | Parallel computations by files |
reduceByRange | Parallel computations by ranges |
reduceByRange-method | Parallel computations by ranges |
reduceByYield | Iterate through a BAM (or other) file, reducing output to a single result. |
reduceFiles | Parallel computations by files |
reduceRanges | Parallel computations by ranges |
REDUCEsampler | Iterate through a BAM (or other) file, reducing output to a single result. |
registerFileType | Functions for creating and searching a registry of file types. |
registry-utils | Functions for creating and searching a registry of file types. |
scanBam-method | Views into a set of BAM files |
show-method | Views into a set of files |
show-method | GenomicFiles objects |
summarizeOverlaps-method | Views into a set of BAM files |
summary-method | Views into a set of BigWig files |
unpack | Un-pack results obtained with a pack()ed group of ranges |
unpack-method | Un-pack results obtained with a pack()ed group of ranges |
yieldSize-method | Views into a set of files |
yieldSize<--method | Views into a set of files |
[-method | Views into a set of files |
[-method | GenomicFiles objects |