Differential Binding of Transcription Factor with ChIP-seq


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Documentation for package ‘DBChIP’ version 1.14.0

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DBChIP-package DBChIP-package
binding.site.list Binding site predictions
chip.data.list ChIP data of transcription factor PHA-4/FOXA in _C.elegans_
conds conds
DBChIP DBChIP
get.site.count Get site count
input.data.list Control/input data of transcription factor PHA-4/FOXA in _C.elegans_
load.data load.data
PHA4 ChIP-seq data of transcription factor PHA-4/FOXA in _C.elegans_
plotPeak Plot peak
read.binding.site.list read.binding.site.list
report.peak Report peaks
site.merge Cluster close-by sites into consensus sites
test.diff.binding Test for differential binding