# Coverage visualization package for R

## Documentation for package ‘CoverageView’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

CoverageView-package | Coverage visualization package for R
cov.interval | arithmetic operation on an interval
cov.interval-method | arithmetic operation on an interval
cov.matrix | Compute a coverage matrix
cov.matrix-method | Compute a coverage matrix
CoverageBamFile | Class '"CoverageBamFile"'
CoverageBamFile-class | Class '"CoverageBamFile"'
CoverageBigWigFile | Class '"CoverageBigWigFile"'
CoverageBigWigFile-class | Class '"CoverageBigWigFile"'
CoverageView | Coverage visualization package for R
DF_H3K36me3 | Example of a coverage matrix using the ChIP-seq data for the H3K36me3 histone modification experiment
DF_H3K36me3_control | Example of a coverage matrix using the control replicate for the ChIP-seq data for the H3K36me3 histone modification experiment
DF_H3K4me3 | Example of a coverage matrix using the ChIP-seq data for the H3K4me3 histone modification experiment
DF_H3K4me3_ctl | Example of a coverage matrix using the control replicate for the ChIP-seq data for the H3K4me3 histone modification experiment
DF_H3K4me3_nopeaks_ratios | Example of a matrix with the ratio of the coverages using the ChIP-seq data for the H3K4me3 histone modification experiment
draw.heatmap | Draw a coverage heatmap
draw.heatmap-method | Draw a coverage heatmap
draw.profile | Draw a coverage profile
draw.profile-method | Draw a coverage profile
export.wig | Generates a WIG file containing the coverage values for a certain genomic interval
export.wig-method | Generates a WIG file containing the coverage values for a certain genomic interval
FoxA1_chr19 | Example of a coverage matrix using the ChIP-seq data for the FoxA1 transcription factor experiment
genome.covplot.cumdepth | Generates a cumulative genome coverage plot
genome.covplot.cumdepth-method | Generates a cumulative genome coverage plot
genome.covplot.depth | Generates a genome coverage plot
genome.covplot.depth-method | Generates a genome coverage plot
path-method | Class '"CoverageBamFile"'
reads_mapped-method | Class '"CoverageBamFile"'
run_type-method | Class '"CoverageBamFile"'
show-method | Class '"CoverageBamFile"'
show-method | Class '"CoverageBigWigFile"'
write.profile | Write coverage values into a file
write.profile-method | Write coverage values into a file