coRegnet-package | coRegnet : inference and interrogation co-regulation networks |
activators | Interogate a coregnet object. |
activators-method | Interogate a coregnet object. |
addCooperativeEvidences | Integration of regulatory evidences. |
addCooperativeEvidences-method | Integration of regulatory evidences. |
addEvidences | Integration of regulatory evidences. |
addEvidences-method | Integration of regulatory evidences. |
CHEA_sub | Human Transcription Factor data and Bladder cancer dataset. |
CIT_BLCA_CNV | Human Transcription Factor data and Bladder cancer dataset. |
CIT_BLCA_EXP | Human Transcription Factor data and Bladder cancer dataset. |
CIT_BLCA_Subgroup | Human Transcription Factor data and Bladder cancer dataset. |
coRegnet | coRegnet : inference and interrogation co-regulation networks |
coregnet | Initialize a co-regulatory network object. |
coregnet-class | Class coregnet - Specifying the structure of the network used throughout the package. |
coregnetToDataframe | Summaries and info coregnet |
coregnetToDataframe-method | Summaries and info coregnet |
coregnetToList | Summaries and info coregnet |
coregnetToList-method | Summaries and info coregnet |
coregnetToList.CoRegNet | Summaries and info coregnet |
coregnetToList.coregnet | Summaries and info coregnet |
coregulators | Extract all co-regulators of a regulatory network. |
coregulators-method | Extract all co-regulators of a regulatory network. |
dim-method | Summaries and info coregnet |
discretizeExpressionData | Three-value discretization of gene expression data. |
display | Display a shiny interactive web interface to |
ENCODE_sub | Human Transcription Factor data and Bladder cancer dataset. |
HIPPIE_sub | Human Transcription Factor data and Bladder cancer dataset. |
hLICORN | Hybrid Learning of co-operative regulation network. |
HumanTF | List of Human Transcription Factors. |
HumanTF_entrezgene | List of Human Transcription Factors. |
length-method | Summaries and info coregnet |
masterRegulator | Identify phenotype related Master Regulators. |
masterRegulator-method | Identify phenotype related Master Regulators. |
print-method | Summaries and info coregnet |
refine | Refine an inferred regulatory network using external evidence. |
refine-method | Refine an inferred regulatory network using external evidence. |
regulatorInfluence | Regulator Influence, estimating the sample specific activity of Transcription Factors. |
regulatorInfluence-method | Regulator Influence, estimating the sample specific activity of Transcription Factors. |
regulators | Interogate a coregnet object. |
regulators-method | Interogate a coregnet object. |
repressors | Interogate a coregnet object. |
repressors-method | Interogate a coregnet object. |
show-method | Summaries and info coregnet |
STRING_sub | Human Transcription Factor data and Bladder cancer dataset. |
summary | Summaries and info coregnet |
summary-method | Summaries and info coregnet |
targets | Interogate a coregnet object. |
targets-method | Interogate a coregnet object. |