arrays | Class "YAQCStats" |
arrays-method | Class "YAQCStats" |
avbg-method | Class "YAQCStats" |
avns | Class "YAQCStats" |
avns-method | Class "YAQCStats" |
bio | Class "YaqcControlProbes" |
bio-method | Class "YaqcControlProbes" |
bio-methods | Class "YaqcControlProbes" |
bioCalls | Class "YAQCStats" |
bioCalls-method | Class "YAQCStats" |
class:YaqcBioProbes | Class "YaqcControlProbes" |
class:YaqcControlProbes | Class "YaqcControlProbes" |
class:YaqcDegProbes | Class "YaqcControlProbes" |
class:YaqcSpkProbes | Class "YaqcControlProbes" |
class:YAQCStats | Class "YAQCStats" |
deg | Class "YaqcControlProbes" |
deg-method | Class "YaqcControlProbes" |
deg-methods | Class "YaqcControlProbes" |
gcosProbes | Class "YAQCStats" |
gcosProbes-method | Class "YAQCStats" |
getAllInt | Get the summerized MAS5 values for a given spike probe |
getBioProbes | Get the names of the Bio spike probes on the array |
getOutliers | Get outliers for the different YAQCStatsObject slots |
getQCRatios | Compute qc probe ratios using GCOS intensity values |
getRatioProbes | Get the names of degradation control probes on the array |
getSpikeProbes | Get the names of all spike probes on the array |
getYaqcControlProbes | Class "YAQCStats" |
getYaqcControlProbes-method | Class "YAQCStats" |
info | Class "YaqcControlProbes" |
info-method | Class "YaqcControlProbes" |
info<- | Class "YaqcControlProbes" |
info<--method | Class "YaqcControlProbes" |
isLog | Class "YAQCStats" |
isLog-method | Class "YAQCStats" |
merge-method | Class "YAQCStats" |
method:yaqc | 'YAQCStats' constructor |
minbg-method | Class "YAQCStats" |
moreSpikeInProbes | Class "YAQCStats" |
moreSpikeInProbes-method | Class "YAQCStats" |
objectVersion | Class "YAQCStats" |
objectVersion-method | Class "YAQCStats" |
percent.present-method | Class "YAQCStats" |
plot,YAQCStats | Plots a YAQCStats object |
plot-method | Plots a YAQCStats object |
probeSelectionInterface | Tcltk Interface to Generate an Instance of YaqcControlProbes for a given Chip Set |
reprodPlot | Plot human whole genome GeneChips reproductibility |
sfs-method | Class "YAQCStats" |
show-method | Class "YAQCStats" |
show-method | Class "YaqcControlProbes" |
spk | Class "YaqcControlProbes" |
spk-method | Class "YaqcControlProbes" |
spk-methods | Class "YaqcControlProbes" |
summary-method | Class "YAQCStats" |
target-method | Class "YAQCStats" |
yaqc | 'YAQCStats' constructor |
yaqc-method | 'YAQCStats' constructor |
yaqc-methods | 'YAQCStats' constructor |
yaqc.affy | 'YAQCStats' constructor |
yaqc.plot | Plots a YAQCStats object |
yaqc.summary | Class "YAQCStats" |
YaqcBioProbes-class | Class "YaqcControlProbes" |
YaqcControlProbes-class | Class "YaqcControlProbes" |
YaqcDegProbes-class | Class "YaqcControlProbes" |
YaqcSpkProbes-class | Class "YaqcControlProbes" |
YAQCStats-class | Class "YAQCStats" |