Package: metaX
Type: Package
Title: An R package for metabolomic data analysis
Version: 1.0.0
Date: 2015-02-10
Author: Bo Wen <wenbo@genomics.cn>
Maintainer: Bo Wen <wenbo@genomics.cn>
Description: The package provides a integrated pipeline for mass
        spectrometry-based metabolomic data analysis. It includes the
        stages peak detection, data preprocessing, normalization,
        missing value imputation, univariate statistical analysis,
        multivariate statistical analysis such as PCA and PLS-DA,
        metabolite identification, pathway analysis, power analysis,
        feature selection and modeling, data quality assessment.
Depends: R (>= 3.2.0),VennDiagram,pROC,SSPA,methods
Imports: Nozzle.R1, ggplot2, parallel, pcaMethods, reshape2, plyr,
        BBmisc, mixOmics, preprocessCore, vsn, pls, impute, missForest,
        doParallel, DiscriMiner, xcms, ape, scatterplot3d, pheatmap,
        bootstrap, boot, caret, dplyr, stringr, RColorBrewer, DiffCorr,
        RCurl, lattice, faahKO, data.table, CAMERA, igraph
License: LGPL-2
Suggests: knitr, BiocStyle, R.utils, RUnit,BiocGenerics
VignetteBuilder: knitr
biocViews: Metabolomics, MassSpectrometry, QualityControl
NeedsCompilation: no
Packaged: 2015-10-15 04:06:15 UTC; biocbuild
Built: R 3.2.2; ; 2015-10-15 17:13:57 UTC; unix
