Package: TFBSTools
Version: 1.8.0
Date: 2015-10-07
Title: Software Package for Transcription Factor Binding Site (TFBS)
        Analysis
Description: TFBSTools is a package for the analysis and manipulation of 
             transcription factor binding sites and 
             transcription factor profile matrices.
Author: Ge Tan <ge.tan09@imperial.ac.uk> 
Maintainer: Ge Tan <ge.tan09@imperial.ac.uk>
VignetteBuilder: knitr
Imports: Biostrings(>= 2.36.4), RSQLite(>= 1.0.0), seqLogo(>= 1.34.0),
        GenomicRanges(>= 1.20.6), caTools(>= 1.17.1), XVector(>=
        0.8.0), rtracklayer(>= 1.28.10), BSgenome(>= 1.36.3),
        S4Vectors(>= 0.6.5), IRanges(>= 2.2.7), methods, gtools(>=
        3.5.0), CNEr(>= 1.4.0), BiocParallel(>= 1.2.21),
        DirichletMultinomial(>= 1.10.0), TFMPvalue(>= 0.0.5),
        BiocGenerics(>= 0.14.0), XML(>= 3.98-1.3), grid, Biobase(>=
        2.28)
Depends: R (>= 3.2.2)
Suggests: JASPAR2014(>= 1.4.0), RUnit(>= 0.4.29), BiocStyle(>= 1.7.7),
        knitr(>= 1.11)
SystemRequirements: meme
License: GPL-2
URL: http://jaspar.genereg.net/
Type: Package
biocViews: MotifAnnotation, GeneRegulation, MotifDiscovery,
        Transcription, Alignment
NeedsCompilation: yes
LazyData: no
Collate: AllGenerics.r AllClasses.r show-methods.r util-methods.r
        XMatrix-methods.r XMatrixList-methods.r SiteSet-methods.r
        coercion-methods.r DB-methods.r PairwiseAlignment-methods.r
        ICM-methods.r PWM-methods.r Motif-methods.r PFM-methods.r
        Wrappers-methods.r DirichletMixture.r TFFM.R TFFMseqLogo.R IO.R
Packaged: 2015-10-15 02:38:25 UTC; biocbuild
Built: R 3.2.2; x86_64-apple-darwin10.8.0; 2015-10-15 17:54:05 UTC; unix
