base.stacking.thermodynamics | Base-stacking thermodynamic parameters |
calcGC | Calculate GC percent |
calcGC-method | Calculate GC percent (methods) |
calcGC-methods | Calculate GC percent (methods) |
calcPrototype | Calculate prototype |
calcPrototype-method | Calculate prototype (methods) |
calcPrototype-methods | Calculate prototype (methods) |
calcTm | Calculate Tm |
calcTm-method | Calculate Tm (methods) |
calcTm-methods | Calculate Tm (methods) |
combineData | Combine data |
combineData-method | Combine data (methods) |
combineData-methods | Combine data (methods) |
createWiggle | Create wiggle track |
createWiggle-method | Create wiggle track (methods) |
createWiggle-methods | Create wiggle track (methods) |
exprs2 | Retrieve microarray data (for signal channel 2) from ExpressionSets |
exprs2-method | Retrieve microarray data (for signal channel 2) from ExpressionSets (methods) |
exprs2-methods | Retrieve microarray data (for signal channel 2) from ExpressionSets (methods) |
exprs2<- | Retrieve microarray data (for signal channel 2) from ExpressionSets |
exprs2<--method | Retrieve microarray data (for signal channel 2) from ExpressionSets (methods) |
fuzzyMatches | Fuzzy matching |
fuzzyMatches-method | Fuzzy matching (methods) |
fuzzyMatches-methods | Fuzzy matching (methods) |
getFeatures | Get features (methods) |
getFeatures-method | Get features (methods) |
getFeatures-methods | Get features (methods) |
getSamples | Get samples |
getSamples-method | Get samples (methods) |
getSamples-methods | Get samples (methods) |
plotBins | Plot bins |
plotBins-method | Plot bins (methods) |
plotBins-methods | Plot bins (methods) |
plotChip | Plot chip image |
plotChip-method | Plot chip image (methods) |
plotChip-methods | Plot chip image (methods) |
plotFeature | Plot feature versus two-color intensity |
plotFeature-method | Plot feature versus two-color intensity (methods) |
plotFeature-methods | Plot feature versus two-color intensity (methods) |
plotPairs | Plot tree-pairs |
plotPairs-method | Plot tree-pairs (methods) |
plotPairs-methods | Plot tree-pairs (methods) |
quantileNormalize | Quantile normalization |
quantileNormalize-method | Quantile normalization (methods) |
quantileNormalize-methods | Quantile normalization (methods) |
readDesign | Read NimbleGen design files |
readDesign-method | Read NimbleGen design files (methods) |
readDesign-methods | Read NimbleGen design files (methods) |
readPairs | Read Nimblegen .pair files |
readPairs-method | Read Nimblegen .pair files (methods) |
readPairs-methods | Read Nimblegen .pair files (methods) |
readSampleKey | Read sample key |