Tools for HELP data analysis


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Documentation for package ‘HELP’ version 1.28.0

Help Pages

base.stacking.thermodynamics Base-stacking thermodynamic parameters
calcGC Calculate GC percent
calcGC-method Calculate GC percent (methods)
calcGC-methods Calculate GC percent (methods)
calcPrototype Calculate prototype
calcPrototype-method Calculate prototype (methods)
calcPrototype-methods Calculate prototype (methods)
calcTm Calculate Tm
calcTm-method Calculate Tm (methods)
calcTm-methods Calculate Tm (methods)
combineData Combine data
combineData-method Combine data (methods)
combineData-methods Combine data (methods)
createWiggle Create wiggle track
createWiggle-method Create wiggle track (methods)
createWiggle-methods Create wiggle track (methods)
exprs2 Retrieve microarray data (for signal channel 2) from ExpressionSets
exprs2-method Retrieve microarray data (for signal channel 2) from ExpressionSets (methods)
exprs2-methods Retrieve microarray data (for signal channel 2) from ExpressionSets (methods)
exprs2<- Retrieve microarray data (for signal channel 2) from ExpressionSets
exprs2<--method Retrieve microarray data (for signal channel 2) from ExpressionSets (methods)
fuzzyMatches Fuzzy matching
fuzzyMatches-method Fuzzy matching (methods)
fuzzyMatches-methods Fuzzy matching (methods)
getFeatures Get features (methods)
getFeatures-method Get features (methods)
getFeatures-methods Get features (methods)
getSamples Get samples
getSamples-method Get samples (methods)
getSamples-methods Get samples (methods)
plotBins Plot bins
plotBins-method Plot bins (methods)
plotBins-methods Plot bins (methods)
plotChip Plot chip image
plotChip-method Plot chip image (methods)
plotChip-methods Plot chip image (methods)
plotFeature Plot feature versus two-color intensity
plotFeature-method Plot feature versus two-color intensity (methods)
plotFeature-methods Plot feature versus two-color intensity (methods)
plotPairs Plot tree-pairs
plotPairs-method Plot tree-pairs (methods)
plotPairs-methods Plot tree-pairs (methods)
quantileNormalize Quantile normalization
quantileNormalize-method Quantile normalization (methods)
quantileNormalize-methods Quantile normalization (methods)
readDesign Read NimbleGen design files
readDesign-method Read NimbleGen design files (methods)
readDesign-methods Read NimbleGen design files (methods)
readPairs Read Nimblegen .pair files
readPairs-method Read Nimblegen .pair files (methods)
readPairs-methods Read Nimblegen .pair files (methods)
readSampleKey Read sample key