DriverNet-package | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer |
actualEvents | Actual events covered by driver mutations |
actualEvents-method | Class '"DriverNetResult"' |
computeDrivers | Compute a list of driver mutations |
computeRandomizedResult | Randomly compute lists of driver mutations |
DriverNet | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer |
DriverNetResult-class | Class '"DriverNetResult"' |
drivers | List of driver mutations identified by DriverNet |
drivers-method | Class '"DriverNetResult"' |
getPatientOutlierMatrix | Compute the patient outlier matrix |
preprocessMatrices | Remove unnecessary entries from matrices |
resultSummary | Summarize result for drivers ranking. |
sampleDriversList | Sample DriverNet result |
sampleGeneNames | Sample gene names |
sampleInfluenceGraph | Sample influence graph |
samplePatientExpressionMatrix | Sample patient expression matrix |
samplePatientMutationMatrix | Sample patient mutation matrix |
samplePatientOutlierMatrix | Sample patient outlier matrix |
sampleRandomDriversResult | Sample Result from computeRandomizedResult |
totalEvents | Total number of events in the data |
totalEvents-method | Class '"DriverNetResult"' |