BiRewire-package | The BiRewire package |
BiRewire | The BiRewire package |
birewire.analysis.bipartite | Analysis of Jaccard similarity trends across switching steps. |
birewire.analysis.dsg | Analysis of Jaccard similarity trends across switching steps. |
birewire.analysis.undirected | Analysis of Jaccard similarity trends across switching steps. |
birewire.bipartite.from.incidence | Converts an incidence matrix into a bipartite graph. |
birewire.build.dsg | Transform a dsg object in a SIF file. |
birewire.induced.bipartite | Transform a SIF data frame into a dsg object (a list of positive and negative incidence matrix). |
birewire.load.dsg | Read a SIF file from a given path |
birewire.rewire.bipartite | Efficient rewiring of bipartite graphs |
birewire.rewire.bipartite.and.projections | Analysis and rewiring function processing a bipartite graphs and its two projections |
birewire.rewire.dsg | Efficient rewiring of directed signed graphs |
birewire.rewire.undirected | Efficient rewiring of undirected graphs |
birewire.sampler.bipartite | Efficient generation of a null model for a given bipartite graph |
birewire.sampler.dsg | Efficient generation of a null model for a given dsg. |
birewire.sampler.undirected | Efficient generation of a null model for a given undirected graph |
birewire.similarity | Compute the Jaccard similarity index between two binary matrices with the same number of non-null entries and the sam row- and column-wise sums. |
birewire.similarity.dsg | Compute the Jaccard similarity index between dsg. |
birewire.visual.monitoring.bipartite | Visual monitoring of the Markov chain underlying the SA for directed graphs. |
birewire.visual.monitoring.dsg | Visual monitoring of the Markov chain underlying the SA for dsgs. |
birewire.visual.monitoring.undirected | Visual monitoring of the Markov chain underlying the SA for undirected graphs. |
BRCA_binary_matrix | TCGA Brest Cancer data |
test_dsg | Tool example of dsg |