proteasy
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteasy.
Protease Mapping
Bioconductor version: Release (3.19)
Retrieval of experimentally derived protease- and cleavage data derived from the MEROPS database. Proteasy contains functions for mapping peptide termini to known sites where a protease cleaves. This package also makes it possible to quickly look up known substrates based on a list of (potential) proteases, or vice versa - look up proteases based on a list of substrates.
Author: Martin Rydén [aut, cre] 
Maintainer: Martin Rydén <martin.ryden at med.lu.se>
citation("proteasy")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("proteasy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proteasy")| Using proteasy to Retrieve and Analyze Protease Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, FunctionalGenomics, Proteomics, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0) |
| Imports | data.table, stringr, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, EnsDb.Rnorvegicus.v79, Rcpi, methods, utils |
| System Requirements | |
| URL | https://github.com/martinry/proteasy |
| Bug Reports | https://github.com/martinry/proteasy/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, igraph, ComplexHeatmap, viridis |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | proteasy_1.6.0.tar.gz |
| Windows Binary (x86_64) | proteasy_1.6.0.zip |
| macOS Binary (x86_64) | proteasy_1.6.0.tgz |
| macOS Binary (arm64) | proteasy_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/proteasy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/proteasy |
| Package Short Url | https://bioconductor.org/packages/proteasy/ |
| Package Downloads Report | Download Stats |