bigmelon
Illumina methylation array analysis for large experiments
Bioconductor version: Release (3.19)
Methods for working with Illumina arrays using gdsfmt.
Author: Tyler J. Gorrie-Stone [aut], Ayden Saffari [aut], Karim Malki [aut], Leonard C. Schalkwyk [cre, aut]
Maintainer: Leonard C. Schalkwyk <lschal at essex.ac.uk>
Citation (from within R, enter
citation("bigmelon")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bigmelon")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bigmelon")| The bigmelon Package | R Script | |
| Reference Manual |
Details
| biocViews | CpGIsland, DNAMethylation, DataImport, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | GPL-3 |
| Depends | R (>= 3.3), wateRmelon(>= 1.25.0), gdsfmt(>= 1.0.4), methods, minfi(>= 1.21.0), Biobase, methylumi |
| Imports | stats, utils, GEOquery, graphics, BiocGenerics, illuminaio |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics, RUnit, BiocStyle, minfiData, parallel, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bigmelon_1.30.0.tar.gz |
| Windows Binary (x86_64) | bigmelon_1.30.0.zip |
| macOS Binary (x86_64) | bigmelon_1.30.0.tgz |
| macOS Binary (arm64) | bigmelon_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bigmelon |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bigmelon |
| Bioc Package Browser | https://code.bioconductor.org/browse/bigmelon/ |
| Package Short Url | https://bioconductor.org/packages/bigmelon/ |
| Package Downloads Report | Download Stats |