Dune
Improving replicability in single-cell RNA-Seq cell type discovery
Bioconductor version: Release (3.19)
Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.
Author: Hector Roux de Bezieux [aut, cre] 
, Kelly Street [aut]
Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>
Citation (from within R, enter
citation("Dune")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Dune")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Dune")| Dune Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6) |
| Imports | BiocParallel, SummarizedExperiment, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr, aricode |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat (>= 2.1.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Dune_1.16.0.tar.gz |
| Windows Binary (x86_64) | Dune_1.16.0.zip (64-bit only) |
| macOS Binary (x86_64) | Dune_1.16.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Dune |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Dune |
| Bioc Package Browser | https://code.bioconductor.org/browse/Dune/ |
| Package Short Url | https://bioconductor.org/packages/Dune/ |
| Package Downloads Report | Download Stats |