Multiview Intercellular SpaTial modeling framework


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Documentation for package ‘mistyR’ version 1.12.0

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add_juxtaview Generate and add a juxtaview to the current view composition
add_paraview Generate and add a paraview to the current view composition
add_views Add custom views to the current view composition
clear_cache Clear cached objects
collect_results Collect and aggregate results
create_initial_view *Start here:* create a basic view composition with an intraview
create_view Create a custom view
extract_signature Extract signatures from the results
filter_views Filter spatial units
plot_contrast_heatmap Plot heatmap of local contrast between two views
plot_contrast_results Plot heatmap of contrast between two result lists
plot_improvement_stats Plot observed performance and improvement per target
plot_interaction_communities Plot marker interaction communities
plot_interaction_heatmap Plot importance heatmap for a view
plot_view_contributions Plot view contributions per target
remove_views Remove views from the current view composition
rename_view Rename view in a view composition
run_misty Train MISTy models
select_markers Select a subset of markers in a view
synthetic Synthetic benchmark data for mistyR