Cell-Type-Specific Power Assessment

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Documentation for package ‘cypress’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cypress-package	cypress: cell-type-specific power assessment
AllClasses	Classes for cypress Package
asdPower	Power calculation results From ASD data without cell type proportion
asd_nopropPower	Power calculation results From ASD data without cell type proportion
asd_noprop_param	Parameter esitmate results from ASD data without cell type proportion
asd_param	Parameter esitmate results from ASD data without cell type proportion
ASD_prop	SimFromData example raw input data
ASD_prop_se	SimFromData example raw input data
cypress	cypress: cell-type-specific power assessment
cypress-class	Classes for cypress Package
cypress-methods	Get a slot from cypress output
cypress_out-class	Classes for cypress Package
est_out-class	Classes for cypress Package
getcypress	Get a slot from cypress output
getcypress-method	Get a slot from cypress output
GSE60424Power	Power calculation results from GSE60424 data
GSE60424_param	Parameter estimate results from GSE60424
ibdPower	Power calculation results from IBD data with cell type proportion
ibd_param	Parameter estimate results from IBD data with cell type proportion
ibd_propPower	Power calculation results from IBD data with cell type proportion
ibd_prop_param	Parameter estimate results from IBD data with cell type proportion
plotFDC	plotFDC: Generate FDC results figure
plotPower	plotPower: Generate statistical power results figure
plotTDR	plotTDR: Generate TDR results figure
quickParaASD	Parameter esitmate results from ASD data without cell type proportion
quickParaGSE60424	Parameter estimate results from GSE60424
quickParaIBD	Parameter estimate results from IBD data with cell type proportion
quickPower	Obtain pre-calculated results from three available datasets
quickPowerASD	Power calculation results From ASD data without cell type proportion
quickPowerGSE60424	Power calculation results from GSE60424 data
quickPowerIBD	Power calculation results from IBD data with cell type proportion
setcypress	Get a slot from cypress output
setcypress-method	Get a slot from cypress output
show-method	Get a slot from cypress output
simFromData	Power calculation results on input data
simFromParam	Power calculation results on pre-calculated parameters