Spatial Transcriptomics Analysis

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Documentation for package ‘Spaniel’ version 1.18.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addCoordinates	Add coordinates to Object Adds output of Spot Detector coordinates to Seurat object or SCE object created by createSeurat/createSCE. Details about how to use Spot Detector can be found: https://github.com/SpatialTranscriptomicsResearch/st_spot_detector
createSCE	Create a SingleCellExperiment Object From Spatial Transcriptomics Data
createSeurat	Create a Seurat Object From Spatial Transcriptomics Data
createVisiumSCE	createVisiumSCE
markClusterCol	markClusterCol
parseImage	This function parses a HE image to use as the background for plots
removeSpots	removeSpots
runShinySpaniel	RunShinySpaniel
selectSpots	selectSpots
spanielPlot	Spatial Transcriptomics Plot