Gene Set Variation Analysis for Microarray and RNA-Seq Data

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Documentation for package ‘GSVA’ version 1.52.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

computeGeneSetsOverlap	Compute gene-sets overlap
computeGeneSetsOverlap-method	Compute gene-sets overlap
deduplicateGeneSets	Handling of Duplicated Gene Set Names
filterGeneSets	Filter gene sets
filterGeneSets-method	Filter gene sets
geneSets	Retrieve or Determine Gene Sets
geneSets-method	Retrieve or Determine Gene Sets
geneSetSizes	Retrieve or Determine Gene Sets
geneSetSizes-method	Retrieve or Determine Gene Sets
gsva	Gene Set Variation Analysis
gsva-method	Gene Set Variation Analysis
GsvaExprData	'GsvaExprData' class
GsvaExprData-class	'GsvaExprData' class
GsvaGeneSets-class	'GsvaGeneSets' class
GsvaMethodParam-class	'GsvaMethodParam' class
gsvaParam	'gsvaParam' class
gsvaParam-class	'gsvaParam' class
igsva	Gene Set Variation Analysis
plageParam	'plageParam' class
plageParam-class	'plageParam' class
readGMT	Import Gene Sets from a GMT File
ssgseaParam	'ssgseaParam' class
ssgseaParam-class	'ssgseaParam' class
zscoreParam	'zscoreParam' class
zscoreParam-class	'zscoreParam' class