A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

Documentation for package ‘shiny.gosling’ version 1.0.0

Help Pages

add_file_to_resource_path	Track data object builder for local csv files
add_mark	Visual marks
add_multi_tracks	Combine single tracks.
add_single_track	Add a single track
arrange_views	Arrange views
atomic_values_to_list	atomic_values_to_list
brush_styles	style of the brush mark
build_json	Build gosling spec from R list
component	Create react component
compose_view	Compose views
default_track_styles	Default styles for tracks
event_styles	Mouse event styles
export_pdf	Export PDF
export_png	Export PNG
get_file_track_data	Track data object builder for local csv files
gosling	Build gosling plot object
GoslingComponent	Create Gosling component
goslingDependency	Setup gosling dependencies
goslingOutput	gosling output function
is_atomic_field	is_atomic_field
json_list	Create list
list_rm_null	Remove null from list
print.gosling	Print method for the gosling component
renderGosling	gosling render function
run_example	Runs a shiny.gosling example
track_data	Data object builder
track_data_csv	Data object builder for a csv file
track_data_gr	Data object builder for a GRanges object by locally saving it
track_data_transform	Data transformer
track_data_transforms	Combine multiple data transforms
use_gosling	Initiate gosling
visual_channel	Generic visual channel builder
visual_channel_color	color visual channel
visual_channel_opacity	opacity visual channel
visual_channel_row	row visual channel
visual_channel_size	size visual channel
visual_channel_stroke	stroke visual channel
visual_channel_stroke_width	stroke width visual channel
visual_channel_text	text visual channel
visual_channel_tooltip	tooltip visual channel
visual_channel_tooltips	Combine tooltips into a list
visual_channel_x	x and xe axis visual channel
visual_channel_y	y and ye axis visual channel
zoom_to	Zoom to
zoom_to_extent	Zoom to extent