| ar_er_peaks |
A set of peaks with AR and ER detected |
| ar_er_seq |
Sequences from peaks with AR and ER detected |
| countPwmMatches |
Count the matches to a PWM within an XStringSet |
| ex_pwm |
Example Position Weight Matrices |
| getPwmMatches |
Find all PWM matches within an XStringSet |
| hg19_mask |
Regions from hg19 with high N content |
| makeRMRanges |
Form a set of random, matching ranges for bootstrapping or permuting |
| makeRMRanges-method |
Form a set of random, matching ranges for bootstrapping or permuting |
| plotMatchPos |
Plot Motif Match Positions |
| testMotifEnrich |
Test motif enrichment using a background set of sequences |
| testMotifPos |
Test for a Uniform Distribution across a set of best matches |
| zr75_enh |
Candidate Enhancer Regions from ZR-75-1 Cells |
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